Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01078 ATGACCCGCCTTCGCACCATCGCATTCCTTTCCATATTATTAGTACTCTTACCTGCCATTGTCGCCGCAAAAGGTGGCAATGCTGGTAAGGGAAAGGCACAACATAACCGCGTAGCTAATATTCACAATGTTACTTATGATGGCAAGTCACTCTTTGTTAATGGAAGACGCGAGCTTCTCTTCTCCGGTTCCATCCATTACACTCGCAGCACTCCTGATATGTGGCCAGTCATTCTTGAAAGAGCAAGACATGGGGGTTTGAATGTTATTCAAACTTATGTGTTTTGGAATGCTCATGAGCCAGAAGAAGGCAAGTTCAACTTTGAAGGCAACTGTGATTTGGTGAAGTTCATTAAGTTGGTTCAAGAGAAAGGCATGTATGTGACTCTCAGGGTTGGACCTTTCATTCAAGCCGAATGGAATCACGGAGGTCTTCCATATTGGCTAAGAGAGGTTAAGGGGATGGTATTTCGTACTGATAATGAACCATATAAGAAACACATGCAAGCATTTGTAGGAAAAGTTATACAAATGATGAAAGATGAGAAACTCTTTGCTCCCCAAGGAGGACCCATCATCTTGGCACAGATTGAAAATGAGTACAACCATGTCCAACGTGCCTATAAAGAGTTCGGAAAAAGATATGTCCAATGGGCTGCAAATATGGCAGTAGCTTTCGATGTTGGTGTTCCGTGGATCATGTGCAAGCAAACTGACGCTCCTGATCCCGTCATCAATGCATGCAATGGAAGACATTGTGGTGATACCTTTACCGGACCAAATAAGCCATACAAGCCAGCTCTATGGACTGAAAATTGGACTGCCCAATACCGATCTTTTGGTGATTCTATATCTAAGAGATCTGCAGAAGATCTTGCCTTCTCAGTTGCCCGATTTTTCTCCAAGAATGGAAATTTGGTCAACTACTATATGTACCATGGTGGAACAAACTTTGGAAGAACCAGCTCCGCCTTTACAACAACTCAATACTACGACCAGGCTCCTCTCGATGAATATGGTCTTGAGAGGGAACCAAAATGGAGTCATCTTAGGGATGCACATAAGGCTATGCTCCTTTGCAGAAAGGCTATTCTTGGAGGTGTTCCCACTGTCGAGAAGATCAACGCCTTCCACGAGGTTAGATTATTTGAGAAGAAAGAAGGAAATATCTGTGCTGCTTTTATCACTAACAACCACACTACTCAAGCAGCTACCATCAGTTTCAGAGGTTCTAACTACTTCTTGCCTGCACATTCCATCAGCGTCCTCCCCGATTGCAAGACTGTTGTTTTCAACACACAAAGCATTGTATCCCAACATAATTCAAGGAACTTTGTGAAGTCTGCTGTCGCAAACAACTTCAAATGGGAGGTGTTTTCTGAGCCAATTGTAAATGCCAAGAAAGTCCCACCAACTGAGTTAAAACCAGTTGAGCTTTACACCATGCTTAAAGACACCTCTGATTACGGATGGTTCACCACTAGCTTTAATTTGACTCAAGCAGACATGCCAAATAAGGGTGGAGCAACTCCGGTTCTTAGCATTGAGACACTTGGACACACACTATCCGCATTTGTTAATGGACAATACATTGGCTTTGGACATGGTTCCCATGAAAAGAAATCTTTTCTATTTGAGAAACCTGCAAACTTTAAGGTTGGAACCAACTACGTATCCCTCTTGGCTACCACTGTTGGACTACCAGACAGTGGATCTTACATGGAAGCTAGGAGTGCAGGACCCGATACCATATTCATCATTGGTCTCGCCAGAACAATTGATCTATCAAACAACGGTTGGGGCCATAAGGTTGGTCTCAAAGGTGAGGAACTTCGAGTTTTCACCGAGGAAGGATCAAAGAACGTTAAGTGGACTCCAGTAGCAGGGCCTGCGCGCCCTGTCTCCTGGTTTAAGACGAGATTCGCCACACCAGAAGGAAAAAGTCCAGTTGCTATCAGGATGACAGGTATGGGAAAAGGCATGATTTGGGTGAACGGTAAGAGCATCGGCCGTCACTGGATGAGCTTCCTTTCTCCTCTCGGTATACCAACTCAATCAGAGTACCATATCCCGAGATCTTACCTTAACGCCAAAGACAATTTGCTTGTTATATTGGAAGACGAAAAGGCCTCTCCCGAAAATATTGAGATAATGAATGTTGACAGAGACACTATCTGCAGTAACATCCGAGAGAACGATCCTGCCAATGTCAATTCGTGGGTATCTAGACACGGACAGTTCCGTGCAGTCACCAAAACTTCAGGGCCACAGGCTTCACTCAAATGTGCCACGGGCAAAAAGATTGTGGCTATCGAATTCGCAAGCTTTGGTAACCCTTCTGGTGTTTGTGGAATGTTTAACCTCGGAACCTGTAACGACGCTTCTGCTAAAAGCGTCGTTGAGAAGGAATGCTTGGGGAAAGAAGCATGTTTGGTTGCAGTGAACCGTGCAAACTTCAACATGAAAGGTGGTGATGCTTGCCCGGATTTGGTGAAGAATCTTGCTATACAAGCAAAGTGTTCTTACTAG 2529 0.4429 MTRLRTIAFLSILLVLLPAIVAAKGGNAGKGKAQHNRVANIHNVTYDGKSLFVNGRRELLFSGSIHYTRSTPDMWPVILERARHGGLNVIQTYVFWNAHEPEEGKFNFEGNCDLVKFIKLVQEKGMYVTLRVGPFIQAEWNHGGLPYWLREVKGMVFRTDNEPYKKHMQAFVGKVIQMMKDEKLFAPQGGPIILAQIENEYNHVQRAYKEFGKRYVQWAANMAVAFDVGVPWIMCKQTDAPDPVINACNGRHCGDTFTGPNKPYKPALWTENWTAQYRSFGDSISKRSAEDLAFSVARFFSKNGNLVNYYMYHGGTNFGRTSSAFTTTQYYDQAPLDEYGLEREPKWSHLRDAHKAMLLCRKAILGGVPTVEKINAFHEVRLFEKKEGNICAAFITNNHTTQAATISFRGSNYFLPAHSISVLPDCKTVVFNTQSIVSQHNSRNFVKSAVANNFKWEVFSEPIVNAKKVPPTELKPVELYTMLKDTSDYGWFTTSFNLTQADMPNKGGATPVLSIETLGHTLSAFVNGQYIGFGHGSHEKKSFLFEKPANFKVGTNYVSLLATTVGLPDSGSYMEARSAGPDTIFIIGLARTIDLSNNGWGHKVGLKGEELRVFTEEGSKNVKWTPVAGPARPVSWFKTRFATPEGKSPVAIRMTGMGKGMIWVNGKSIGRHWMSFLSPLGIPTQSEYHIPRSYLNAKDNLLVILEDEKASPENIEIMNVDRDTICSNIRENDPANVNSWVSRHGQFRAVTKTSGPQASLKCATGKKIVAIEFASFGNPSGVCGMFNLGTCNDASAKSVVEKECLGKEACLVAVNRANFNMKGGDACPDLVKNLAIQAKCSY 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01078 842 FunFam Beta-galactosidase 40 360 - -
Vivi3g01078 842 Gene3D - 744 842 IPR043159 -
Vivi3g01078 842 Coils Coil 194 214 - -
Vivi3g01078 842 CDD Gal_Rha_Lectin_BGal 755 840 - -
Vivi3g01078 842 Pfam Beta-galactosidase jelly roll domain 623 707 IPR025300 -
Vivi3g01078 842 Gene3D Glycosidases 41 359 - -
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 268 283 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 130 149 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 659 675 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 187 202 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 75 93 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 324 340 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 632 646 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 305 320 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 PRINTS Glycosyl hydrolase family 35 signature 54 71 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 189 201 IPR019801 GO:0004553|GO:0005975
Vivi3g01078 842 SUPERFAMILY Galactose-binding domain-like 598 746 IPR008979 -
Vivi3g01078 842 Gene3D - 602 731 - -
Vivi3g01078 842 Gene3D - 370 598 - -
Vivi3g01078 842 ProSiteProfiles SUEL-type lectin domain profile. 752 841 IPR000922 GO:0030246
Vivi3g01078 842 Pfam Glycosyl hydrolases family 35 50 356 IPR031330 -
Vivi3g01078 842 SUPERFAMILY Galactose-binding domain-like 420 591 IPR008979 -
Vivi3g01078 842 PANTHER BETA-GALACTOSIDASE RELATED 37 757 IPR001944 GO:0004553|GO:0005975
Vivi3g01078 842 FunFam Beta-galactosidase 602 726 - -
Vivi3g01078 842 SUPERFAMILY (Trans)glycosidases 43 360 IPR017853 -
Vivi3g01078 842 Pfam Beta-sandwich domain in beta galactosidase 366 435 IPR041392 -
Vivi3g01078 842 Pfam Galactose binding lectin domain 760 840 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01078 Vivi-Chr3 18096960 18100871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01078 44 840 Glycoside Hydrolase AT2G16730 59.301 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01078 - - gmx:100791456 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01078 3 18096960 18100871 Vivi3g01078 3 18096960 18100871 ECH