Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01071 ATGGAAACTCGTAGCCGGAAGAGGGCGGAGGGTTCCTCAACTGCCCCTTCATCATCATCATCCACAACGACTGCTCGCACCACTCGTTCAGCTTCAACCAAACGCACTCGTCTCTCTTCGATCTCTCACGCCGCTACTTCTGTTTCCGCTAACACTCGTTCTCGCTCTCGTTCATCCATCAATAATTCTGATTCTTCCATGGAGCCTCATCCTGTTAACGAATCCTCCTCCGGTTCGCGCCGTGATCGCCGCGGTAGGAATAATTCCAATAGAGATAATAGTTCTGATAAAGGTAAAGAGAAAGAACATGATGTTAGGGTTAGGGATCGGGACCGGAGATTGGTTGGTTTAAATATTGTTAACGGAGGTGGAGGTGGTGGCGACGATGATGATGTTGAGAGTGATGGTGATGGTGATGATGGAATTATGCATGAGAATTTGAACTCTGCTAGTAGTGCTCTTCAGGGGCTTCTTAGGAAACTCGGTATTGGATTTGATGATCTGATTCCGATGAGTGGTTCTGGATCTTCGGCGTATCAGGATGGAAGGTTTAAGAAGATTTTGACTAGTTTGCGTGCTGATGGGGAAGAAGGTCCTCAGGTTGAGGCATTGACGCAGCTATGTGAAATGCTTTCTATTGCTTCTGAGGATTCACTCAGTTCATTCTCTGTTGATTCCTTTGTTCCTGTGCTCGTTGGGTTGCTTAACCACGAGAGCAATCCTGATGTCATGCTTCTAGCTGCCAGGGCATTAACTCATCTCTGCGATGTGCTTCCCTCGTCTTGTACCGCTGTTCTGCATTATGGTGCGGTGCCAATCTTCTGTGCCAGATTGCTTACTATAGAGTATATGGACTTGGCCGAGCAGTCTCTTCAAGCATTAAAGAAGATTTCTCAGGAACACCCGACTGCTTGTCTTCGAGCTGGTGCTCTGATGGCTGTACTTTCTTATTTGGACTTCTTCTCTACGGGAGTTCAGAGGGTGGCATTGTCGACTGCTGCTAATATGTGCAAGAAGCTTCCTTCTGATGCGGCTGACTTTGTGATGGAAGCTGTTCCTCTTTTGACAAACCTCCTTCAGTATCATGATGCCAAGGTTCTTGAGCACGCCTCCATATGTTTGACTCGAATAACTGAGGCATTTTCTTCATCCCCGGACAAATTAGATAAATTGTGCAATCATGGACTGGTAGCACAAGCTGCCTCCCTAATTTCTACTAGTAGTTCTGGTGGTGGACAGGCTTCTCTCAGCACGTCAACATATACTGGCTTGATCCGACTTCTTTCCACATGTGCAAGTGGGTCCTCTCTTGGAGCTAAAACTTTGTTTCTCCTTGGAATTAGTGGCACTCTTAAAGATATACTATCTGGTTCTGGAGTTTCATCTAATGCCTCTGTTTCACCTGCATTGAATAGGCCAGCAGATCAGATATTTGAGATTGTGAACCTGGCAAATGAACTTCTGCCTCCGTTGCCTCAAGGAGCTATGTCTCTTCCAGTCATATCAAACATGCTCTTGAAAGGGCCTGTTGTGAAAAGGTCTCCTGCCAGCAGTTCTGGGACACAAGACCCAACTGGAATTGTTCATGAAATATCAGCTCGAGAGAAAATACTAAATGATCAGCCTGAGCTGCTTCAGCAATTTGAGATGGATCTCCTCCCAGTTTTGATGCAGATATACGGTTCCAGCGTCAATGGTTCTGTTCGCAACAAATGTCTGTCTGTCATTGTAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCTGGTGTTCTAGCATGGAAAGATCCACATATTTTGGTTCATGCCTTGCAAATTGCAGAAATCCTGATGGAAAAGCTTCCTGAAACATTATCTAAGATGTTTGTCAGAGAAGGTGTGGTCCATGCAGTTGACCAACTTATTGTGGCTGGAGAGTCAATCAATATCACTACTACACAAGCATCTTCCAGGGAGAAGGATGGTGATTCCATACCTGGAGCGTCATTTCACCGTAAGCACTATCACCTACGCAGTGGTAACTTAAATCCCGATGAAAATCTCCTGGACGATTTGAAGAGTCCAGTTCCAGTAAAAGTGAGTGTGCCACCATGTTCTGTGGAACCTCCAACAGTTAACTCCAGCATTCGCTCATCAGTTAGCTCAGCTGCTAAAAATTTTAAAGACAGGTACTTTCCTTCTGTTCCGGGGACTGTTGAAGTGGGTGTTAGTGACGATCTTTTGCACCTGAAAAATCTTTGCATCAAGTTGAATACTGGTGTTGATGACCAAAGAACTAAGGTAAAGGGAAAAGCTAAAGCTTCTGGATTTGGTCAGGACAAAAAGTCTGCTAATTTGGAAGATTATTTGATTGGGGTGATTTCTGACATGCTAAAGGAGCTTGGCAAAGGAGATGGTGTGTCTACTTTTGAATTTATTGGAAGTGGTGTTGTTGAAGCTTTGCTTAATTACTTCTCTTGTGGGTATTCTTCTAAACATCGAATCTCAGAAACCAATATGCTCAAGCTTCGGCAACTAGCACTTATGAGGTTTAAGTCATTTGTTGCTGTTGCACTACCTACTAACACTGACAATAGGGTTACTGCTCCTATGACTATCTTGGTTCAGAAGCTTCAAAATGCTTTGTCTTCCTTGGAGCATTTTTCTGTTCTTCTGAGTCCCATATCTCTGTCGTCTCAGCCCTACAAGTTGCGTCTCTGTCGAGCCCAGGGTGAAAAGTCACTTAAGGATTATTCATCAAGCATTGTATTGATTGATCCCTTAGCAAGTTTAGCAGCCATCGAGGAGTTTCTGTGGCCCCGTGTCCAGCGTGGTGAACCTGCTCAAAAGTCTACCGCACCTGCTGGGAATTTGGCATCTAGAACGACTCCTACAAGAGCAGGTGCTTCATCTCCTTCCACTCGAACTCCCTCCATTGTCCATCGTCATTCTACTAGATCTAGAACTTCTGTTAGTATAGGAGATACTCCTAGAAAAGAACTATCTCAAAATAAAAGCACAAGCTCATCTAAGGTCAAGGGCAAAGCTGTATTAAAGCCTGCACCGGAAGAAGCTAGAGGACCCCAAACAAGGAATGCTGCACGGAGAAGAGCAGATCTCAGCAAAGATGCTTTCATGAAACCAACAAATGCTGAGTCAACATCTGAGGATGAAGAATTGGATATATCTCCCGTTGAGATTGAAGATGATGATATTTCTGAAGATGATATTTCAGATGATGATGAGGATGACCATGAAGAGGTTCTGAGGGATGATTCTCTTCCTGTTTGCTCTCCTGACAAAGTACATGATGTGAAATTGGGAGACCCCGCGGAGAGTACCCTGGCCGCGGCAACAAATGATAGCTTGACTAATGTAGCTTTAGGTTCTAGCAGCAAAGCTGGTACAGCCAGGGAGTCTGACTCTGCTGATTTTAAGAGTGGCCATTCATCTAGCTCAAGGGGTGCAACATCGTTTGCCGCTGCCATGGCAGGACTTGGATATGCTAATACAAGAGGTTTCAGGGGTGGCAGAGATAGACATGGACGACTGTTTGGAAGTTCAAATGAGCCTCCGAAATTGATTTTTACTGCTGGTGGGAAGCAGCTCAATAGAAATCTGACTGTATATCAGGCAGTTCAAAGACAGCTTGTGCTAGATGAAGACGACGATGATAGGTTTGCTAGAAGTGATTTGATATCCAGTGATGGAAGTGGACCGTGGGGTGAAACTTGCACCATCACTTATCAGAGGGCTGAAAACCAGACAAACAGAGATCCTACTGGAGGATCAAGTTCAAATACTTCGAAGGCTGCCAAATCTGGGTCTTCCTCTAATTTCAGTTCAGAAGCTAAGTTGCATCAGACGTCAGTTCTCGACAGTATATTGCAGGGAGAATTGCCCTGTGATCTAGAGAAATCTAATCCTACCTACAATATTCTGGCACTACTGCGTGTGTTGGAAGGTTTGAACCAGCTTGCGCCTCGTTTAAGGGCCCAAATGGTTAATGATCAATTTGCTGAGGGAAAAATCTTTGATTTTGACGAGCTAGGTGTTACCGCCGGTGCTAGGGTGTCCCCAGAGGAATTTGTAAGTAGCAAGATTACTCCAAAATTGGCCAGGCAAATACAGGATGCGCTTGTACTGTGCAGTGGCAGTCTCCCCTCATGGTGTAACCAGTTGACTAAAGCTTGCCCTTTCTTGTTTCCTTTTGAGACTCGACAGCAGTACTTTTATTCAACTGCGTTTGGGTTATCTCGTGCACTCAATCGACTTCAGCAGCAACAAGGTGCTGAGGGTCTAGGATCAACAACTGAAAGAGCGACGAGGGTAGGGAGATTGCAACGCCAAAAGGTCCGTGTATCTCGAAATCGGATTTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTGCTTGAAGTGGAATATTTTGGTGAAGTTGGCACTGGTCTGGGACCCACCCTTGAGTTTTATACAATTCTAAGTCACGACTTGCAAAAAGTTAGACTGCAAATGTGGAGGTCTTATTCTTCAGAGAAACATCAAATGGAGGTTGATGGAGATGAAAAGAAAATGAAAAGCTGTGAAGGCTATGGGCCTAATGTCCCTGGAGATGGGGAACTAGTGCAAGCTCCTATGGGGTTGTTTCCTCGGCCATGGCCTACAAATGCTGATGCATCAGTGGATAGCCAGTTTACAAAAGTGGTTGAATATTTTCGGCTGCTAGGCCGTGTGATGGCTAAAGCTCTTCAAGATGGTCGCCTATTGGATCTTCCATTGTCGGTGGCATTTTATAAGCTTATTCTTGGTCAAGATCTTGATTTGCATGACATTGTTTTCATTGATGCGGAGCTTGGGAAGACTTTGCAAGAGTTGAATGCAATTGTTCGACGCAAGCATCATATGAAATCCATTTGTGATAACTCTAATGATGCTGACACTGACTTTGTTTTTCGTGGCACCCAAATTGAAGATCTCTGTTTGGACTTTACGCTTCCTGGTTATCCAGAATACATATTGAAACCAGGAGATGACATAGTTGATATCAACAATTTGGAGGAGTATGTATCCTTGGTGGTTGACGCAACTGTCAAGAATGGAATCACACGACAAATGGAAGCATTCAGAGCAGGGTTTAACCAGGTTTTTGACATTTCATCTTTACAAATTTTTAATCCCCAAGAACTGGATAATTTGCTTTGCGGCCGCCGAGAGTTGTGGGAGGCAGAGACACTTACTGATCATATAAAGTTCGACCATGGATACACTGCTAAAAGCCCTGCCATTGTTAATTTACTTACAATTATGGGAGAGTTCACTCCAGAACAACAGAGGGCCTTCTGTCAGTTTGTTACTGGTGCGCCCAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCGAAACTAACAATTGTGAGGAAGCTGTCGTCAACTGCAGTAAATACTTCATCTAATGGGAATGTGCATTCAGAATCAGCCGATGATGACTTGCCCAGTGTTATGACATGTGCTAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAAAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCGTGA 5643 0.4428 METRSRKRAEGSSTAPSSSSSTTTARTTRSASTKRTRLSSISHAATSVSANTRSRSRSSINNSDSSMEPHPVNESSSGSRRDRRGRNNSNRDNSSDKGKEKEHDVRVRDRDRRLVGLNIVNGGGGGGDDDDVESDGDGDDGIMHENLNSASSALQGLLRKLGIGFDDLIPMSGSGSSAYQDGRFKKILTSLRADGEEGPQVEALTQLCEMLSIASEDSLSSFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCTAVLHYGAVPIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASICLTRITEAFSSSPDKLDKLCNHGLVAQAASLISTSSSGGGQASLSTSTYTGLIRLLSTCASGSSLGAKTLFLLGISGTLKDILSGSGVSSNASVSPALNRPADQIFEIVNLANELLPPLPQGAMSLPVISNMLLKGPVVKRSPASSSGTQDPTGIVHEISAREKILNDQPELLQQFEMDLLPVLMQIYGSSVNGSVRNKCLSVIVKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHILVHALQIAEILMEKLPETLSKMFVREGVVHAVDQLIVAGESINITTTQASSREKDGDSIPGASFHRKHYHLRSGNLNPDENLLDDLKSPVPVKVSVPPCSVEPPTVNSSIRSSVSSAAKNFKDRYFPSVPGTVEVGVSDDLLHLKNLCIKLNTGVDDQRTKVKGKAKASGFGQDKKSANLEDYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLNYFSCGYSSKHRISETNMLKLRQLALMRFKSFVAVALPTNTDNRVTAPMTILVQKLQNALSSLEHFSVLLSPISLSSQPYKLRLCRAQGEKSLKDYSSSIVLIDPLASLAAIEEFLWPRVQRGEPAQKSTAPAGNLASRTTPTRAGASSPSTRTPSIVHRHSTRSRTSVSIGDTPRKELSQNKSTSSSKVKGKAVLKPAPEEARGPQTRNAARRRADLSKDAFMKPTNAESTSEDEELDISPVEIEDDDISEDDISDDDEDDHEEVLRDDSLPVCSPDKVHDVKLGDPAESTLAAATNDSLTNVALGSSSKAGTARESDSADFKSGHSSSSRGATSFAAAMAGLGYANTRGFRGGRDRHGRLFGSSNEPPKLIFTAGGKQLNRNLTVYQAVQRQLVLDEDDDDRFARSDLISSDGSGPWGETCTITYQRAENQTNRDPTGGSSSNTSKAAKSGSSSNFSSEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGLNQLAPRLRAQMVNDQFAEGKIFDFDELGVTAGARVSPEEFVSSKITPKLARQIQDALVLCSGSLPSWCNQLTKACPFLFPFETRQQYFYSTAFGLSRALNRLQQQQGAEGLGSTTERATRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVRLQMWRSYSSEKHQMEVDGDEKKMKSCEGYGPNVPGDGELVQAPMGLFPRPWPTNADASVDSQFTKVVEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLILGQDLDLHDIVFIDAELGKTLQELNAIVRRKHHMKSICDNSNDADTDFVFRGTQIEDLCLDFTLPGYPEYILKPGDDIVDINNLEEYVSLVVDATVKNGITRQMEAFRAGFNQVFDISSLQIFNPQELDNLLCGRRELWEAETLTDHIKFDHGYTAKSPAIVNLLTIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNVHSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS 1880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01071 1880 Gene3D Hect, E3 ligase catalytic domain 1751 1878 - -
Vivi3g01071 1880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 13 1880 IPR045322 GO:0006511|GO:0061630
Vivi3g01071 1880 ProSiteProfiles HECT domain profile. 1580 1880 IPR000569 GO:0004842
Vivi3g01071 1880 SUPERFAMILY Hect, E3 ligase catalytic domain 1448 1873 IPR035983 GO:0004842
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1061 1094 - -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 10 74 - -
Vivi3g01071 1880 SMART hect_3 1467 1880 IPR000569 GO:0004842
Vivi3g01071 1880 Gene3D - 176 491 IPR011989 -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1258 1288 - -
Vivi3g01071 1880 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1749 1879 - -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1035 1049 - -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1136 1160 - -
Vivi3g01071 1880 SMART arm_5 298 338 IPR000225 GO:0005515
Vivi3g01071 1880 SMART arm_5 215 256 IPR000225 GO:0005515
Vivi3g01071 1880 SMART arm_5 341 379 IPR000225 GO:0005515
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1095 1111 - -
Vivi3g01071 1880 CDD HECTc 1456 1875 IPR000569 GO:0004842
Vivi3g01071 1880 Gene3D - 526 656 IPR011989 -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 951 1111 - -
Vivi3g01071 1880 Gene3D Hect, E3 ligase catalytic domains 1397 1641 - -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 1 139 - -
Vivi3g01071 1880 FunFam E3 ubiquitin-protein ligase UPL3 1397 1641 - -
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 959 1019 - -
Vivi3g01071 1880 Pfam HECT-domain (ubiquitin-transferase) 1505 1880 IPR000569 GO:0004842
Vivi3g01071 1880 MobiDBLite consensus disorder prediction 75 115 - -
Vivi3g01071 1880 FunFam HECT ubiquitin protein ligase family protein KAK 177 491 - -
Vivi3g01071 1880 SUPERFAMILY ARM repeat 185 647 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01071 Vivi-Chr3 18006464 18032073 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01071 K10590 - gmx:100791450 2664.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01071 3 18006464 18032073 Vivi3g01071 3 18006464 18032073 ECH