Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01027 ATGTTGCAACTTATTTCACTTTTCTTCCTTCTGCTACCGTTATGGGTTTCTTCAATCTATGATGGACCCCTATATGCCTCAACTGCTTATACTCAGTGCAAAGGGTATCCTGAGAAGCCACTTTATGGAGGGGGTATTTTCAAGCATAATATTGCACAAATTAAAACCAACAATAACATGTCTTCTTCACTTGTCGTATACAATCTTAAACAAGACACTATCTACTCTTTTTCCGCATGGGTGAGGGTTAAAGGTTCAGATTCGGTTATGATAAGGGCAAGGTTGGAAGCAGAACATGATACATACAACTGTATTGGGACAGTTTCTGCCAAGAGTGGATGTTGGTCTTTTCTTAAGGGTGGATTTGTTCTTAATTCACATTCGAATTCATCTACCATTATCTTTAAGAATGCAAATGGCAAAGATGTTGGTATGGATATAACAAGTCTGTCACTACAGCCGTTTACTAAGCAGGAATGGAGATTCAACCAAGAATATATAATCAACACTAAAAGAAAGCGTGCGGTCACAATTCATGTATCAGATACAAATGGAAAGAAATTACCAGGAGCTTTTGTGCGTATAGAGCAAATATCAAAAGACTTTCCTATAGGTTCTGCAATAGCAAAGACAATTCTTGGAAACACACCATATCAAAACTGGTTTGTAAAACGTTTCAACGCCGCAGTCTTTGAAAACGAGCTTAAATGGTACGCCACAGAACCTCATCAAGGCAGAGTCAATTATACAATTTCAGATCAAATGATGGAATTTGTTAGATCCAAAAAAATCATCGCTAGAGGACACAATATATTTTGGGAAGATCCAAAATACACACCTGCATGGGTTCTTAACCTTACAAGTACAGAACTAGAATCAGCTGTGAATTCTAGACTAAAAAGTCTCATGAAACAATACAAAACTGAGTTCATACACTGGGATGTTAGCAACGAAAATCTTCATTTTGATTTCTACGAAAAAAGGCTTGGACAAAATGCTACATTTCAGTTCTTCCAGGCAGCACATGAATCAGATCCTTTAGCAACTTTGTTTATGAATGACTTCAATGTTGTAGAAACATGCAGTGTAAAATCTAGTGTCGATGCATATATTTTAAAGATAAGAGAACTAAGACAACATGGTATTTTTATGGATGGTATTGGATTAGAGGGTCATTTCACAATACCGAATCCTCCGCTTATCAGAGCTATCTTAGACAAATTGGCAACACTGGATCTTCCCATTTGGTTTACTGAGATTGATATAAGCAAGACACTTGATCACGAAACTCAGGCAATTTATTTGGAACAAGTGCTGAGAGAAGGATTCTCGCACCCTTCAGTGAATGGGATAATGCTATGGACAGCACTTCATCCATATGGATGCTACCAAATGTGTCTTACAGATAATGATTTGAAGAACTTACCATCAGGTGATATAGTGGACAAGCTTCTTAAAGAGTGGCAAACTGGTCGTGTAGAGGGAGTCACAAAAAAGCATGGTTCACATAGCTTTTATGGATTCTTGGGTGAATATAAAGTCAGTGTTGAGTATGAAAACAGGACCATAGATTCAACATTTTTTCTAGGTAGTGGTGATGAAACTAAACATGTCACTGTCACATTGTGA 1629 0.3732 MLQLISLFFLLLPLWVSSIYDGPLYASTAYTQCKGYPEKPLYGGGIFKHNIAQIKTNNNMSSSLVVYNLKQDTIYSFSAWVRVKGSDSVMIRARLEAEHDTYNCIGTVSAKSGCWSFLKGGFVLNSHSNSSTIIFKNANGKDVGMDITSLSLQPFTKQEWRFNQEYIINTKRKRAVTIHVSDTNGKKLPGAFVRIEQISKDFPIGSAIAKTILGNTPYQNWFVKRFNAAVFENELKWYATEPHQGRVNYTISDQMMEFVRSKKIIARGHNIFWEDPKYTPAWVLNLTSTELESAVNSRLKSLMKQYKTEFIHWDVSNENLHFDFYEKRLGQNATFQFFQAAHESDPLATLFMNDFNVVETCSVKSSVDAYILKIRELRQHGIFMDGIGLEGHFTIPNPPLIRAILDKLATLDLPIWFTEIDISKTLDHETQAIYLEQVLREGFSHPSVNGIMLWTALHPYGCYQMCLTDNDLKNLPSGDIVDKLLKEWQTGRVEGVTKKHGSHSFYGFLGEYKVSVEYENRTIDSTFFLGSGDETKHVTVTL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01027 542 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 189 484 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 PRINTS Glycosyl hydrolase family 10 signature 380 392 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 PRINTS Glycosyl hydrolase family 10 signature 310 321 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 PRINTS Glycosyl hydrolase family 10 signature 266 278 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 PRINTS Glycosyl hydrolase family 10 signature 348 359 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 Gene3D - 50 151 - -
Vivi3g01027 542 SUPERFAMILY Galactose-binding domain-like 57 152 IPR008979 -
Vivi3g01027 542 Gene3D Glycosidases 191 500 - -
Vivi3g01027 542 SUPERFAMILY (Trans)glycosidases 188 492 IPR017853 -
Vivi3g01027 542 SMART glyco_10 235 475 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 Pfam Glycosyl hydrolase family 10 198 456 IPR001000 GO:0004553|GO:0005975
Vivi3g01027 542 Coils Coil 540 542 - -
Vivi3g01027 542 PANTHER GLYCOSYL HYDROLASE 51 531 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01027 Vivi-Chr3 17118800 17121713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01027 21 542 Glycoside Hydrolase AT4G38650 63.109 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01027 - - gmx:100806005 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01027 3 17118800 17121713 Vivi3g01027 3 17118800 17121713 ECH