Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00987 ATGAGTTCAGACAGCCGCAGCCGAAGCCGAAGCAGGAGTAGGAGTCGTAGCCCTGGGATCCGTAGGATTCGCTCTGATCGACATTCCTATCGCGATGCTCCTTACCGGAGAGATTCAAGTCGGGGTTTCAGCCGGGACAATTTGTGCAAGAACTGCAAGAGGCCTGGTCACTATGCTAGAGAATGTCCTAATGTTGCAGTTTGCCACAATTGTGGCCTTCCTGGGCACATTTCATCTGAATGCTCCACAAAATCTGTGTGCTGGAATTGCAAAGAACCTGGCCACATGGCCAGCAGTTGTCCAAATGAAGGAATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCAGCAATGCCTCCAGGGGACTTAAGGTTGTGCCATAACTGCTATAAGCAGGGTCACATTGCTGTTGAATGTACGAATGAGAAGGCTTGCAATAACTGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGCAACGTGTGCAATGTTTCTGGACATGTGGCTAGACAATGTCCAAAATCAAACATTATTGGAGATCACAGTGGCAGAGGCAGCTTCCGTGGTGCTGGTGGAGCCGGTGGTGGTGGTGGTTACCGCGATGTTGTGTGCCGGAACTGTCAACAGTTGGGTCATATGAGCCGTGACTGCATGGGCCCCTTGATGATTTGTCACAATTGTGGAGGCCGTGGTCACTTGGCATATGAGTGTCCTTCAGGTCGCTTTGTGGATCGCTACCCTAGTGATCGCTACCATAGTAGGAGATACTAA 804 0.5062 MSSDSRSRSRSRSRSRSPGIRRIRSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHISSECSTKSVCWNCKEPGHMASSCPNEGICHTCGKTGHRARECSAPAMPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNIIGDHSGRGSFRGAGGAGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSDRYHSRRY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 87 102 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g00987 267 Gene3D - 84 104 - -
Vivi3g00987 267 SUPERFAMILY Retrovirus zinc finger-like domains 34 65 IPR036875 GO:0003676|GO:0008270
Vivi3g00987 267 SUPERFAMILY Retrovirus zinc finger-like domains 126 167 IPR036875 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 68 81 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 151 166 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 215 228 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Gene3D - 4 83 - -
Vivi3g00987 267 Pfam Zinc knuckle 131 148 - -
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 235 250 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 PANTHER - 6 256 - -
Vivi3g00987 267 Pfam Zinc knuckle 67 82 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 234 250 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 86 102 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 150 166 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 214 228 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 48 64 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 Pfam Zinc knuckle 169 185 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SUPERFAMILY Retrovirus zinc finger-like domains 206 252 IPR036875 GO:0003676|GO:0008270
Vivi3g00987 267 Gene3D - 209 252 - -
Vivi3g00987 267 Gene3D - 149 188 - -
Vivi3g00987 267 Gene3D - 105 148 - -
Vivi3g00987 267 SUPERFAMILY Retrovirus zinc finger-like domains 65 103 IPR036875 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 234 250 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Vivi3g00987 267 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00987 Vivi-Chr3 16401295 16405455 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00987 K09250 - gmx:100775501 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00987 3 16401295 16405455 Vivi3g00987 3 16401295 16405455 ECH