LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g00909	ATGGCTTCTGGTTGTGTGAGCTTGAAAACCAACACCCATTTTCTAAATTCTAAAAAAGGTTCTTTTTTTGGAGAAAGAGTCAATGGAAGCTTGAAAAACAGTTCATGGGTCATAGCACAGAAGAAGATCAAACCTGCTGCTTTTTCTGCTATTCTTACTTCAGATGACCCCAAAGGTTCCCTGAATTTGCAAGTGCCTTCATTTCTGAGACTAAGGGCTGATCCAAAGAATGTGATTTCCATTGTGTTGGGAGGAGGGCCTGGAACACATCTCTATCCCCTTACCAAACGAGCTGCAACACCTGCGGTTCCTGTTGGAGGATGCTATAGGCTTATAGATATTCCAATGAGTAACTGCATCAATAGTGGGATCAACAAGATATTTGTGCTGACTCAGTTCAACTCTGCTTCGTTAAATCGTCACATCGCTCGAACCTATTTCGGAAATGGTGTCAACTTTGGTGATGGATTTGTGGAGGTTCTGGCGGCGACACAAACACCAGGAGAAGCTGGAAAGAAGTGGTTTCAAGGAACTGCGGATGCTGTGAGACAATTTACCTGGATATTTGAGGATGCCAAGAATATAAACGTCGAGAATGTATTGATCTTGGCGGGAGATCATTTATACCGAATGGATTACATGGACCTTTTGCAGAGTCACGTTGATAGAAATGCCGATATTACAGTTTCATGTGCCGCTGTTGGTGACAACCGTGCATCGGATTATGGATTGGTCAAGGTAGACGACAGAGGCAACATCATCCAATTTTCAGAAAAACCGAAAGGCCCTGATCTGAAAGCAATGCAAGTTGATACTTCTCGTCTTGGCTTGTCACCACAAGATGCATCGAAGTCACCATATATTGCCTCTATGGGAGTTTATGTATTCAAGAAAGATGTTTTACTCAAGCTTCTGAAATGGAGGTATCCTACAGCTAATGACTTCGGTTCTGAAATCATTCCTTCAGCTATAAAAGAACACAATGTCCAAGCATATTATTTCGGAGACTATTGGGAAGATATTGGAACGATAAAATCCTTCTATGATGCTAACCTCGCTCTTACTGAAGAGAGTCCAAAGTTTGAGTTTTATGATCCAAAGACACCGATTTTCACATCTCCAGGATTCCTACCACCAACAAAGTTTGACAACTCTCGAGTTGTGGATGCCATTATCTCCCATGGATGTTTCCTGAGAGATTGTACAATCCAACACTCCATTGTCGGTGAAAGATCGCGTTTAGATTATGGCGTTGAGCTTCAGGACACTGTAATGATGGGAGCGGACTATTACCAAACTGAATCCGAAATCGCTTCTCTACTTGCAGAAGGGAAGGTCCCGATTGGCATCGGAAGGAATACCAAAATCAAGAACTGCATTATTGACAAAAATGCAAAGATCGGGAAAGATGTCGTCATCGCAAACAAAGACGGCGTTCAAGAAGCGGATAGATCGGAAGATGGTTTCTACATCCGATCAGGAATCACCATCATAATGGAGAAAGCGACGATAGAAGACGGAACTGTCATATAA	1533	0.4247	MASGCVSLKTNTHFLNSKKGSFFGERVNGSLKNSSWVIAQKKIKPAAFSAILTSDDPKGSLNLQVPSFLRLRADPKNVISIVLGGGPGTHLYPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWIFEDAKNINVENVLILAGDHLYRMDYMDLLQSHVDRNADITVSCAAVGDNRASDYGLVKVDDRGNIIQFSEKPKGPDLKAMQVDTSRLGLSPQDASKSPYIASMGVYVFKKDVLLKLLKWRYPTANDFGSEIIPSAIKEHNVQAYYFGDYWEDIGTIKSFYDANLALTEESPKFEFYDPKTPIFTSPGFLPPTKFDNSRVVDAIISHGCFLRDCTIQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIKNCIIDKNAKIGKDVVIANKDGVQEADRSEDGFYIRSGITIIMEKATIEDGTVI	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g00909	510	Gene3D	Hexapeptide repeat proteins	376	510	-	-
	Vivi3g00909	510	FunFam	Glucose-1-phosphate adenylyltransferase	376	510	-	-
	Vivi3g00909	510	CDD	LbH_G1P_AT_C	378	504	-	-
	Vivi3g00909	510	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	68	375	IPR029044	-
	Vivi3g00909	510	Pfam	Nucleotidyl transferase	80	356	IPR005835	GO:0009058
	Vivi3g00909	510	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	76	472	IPR029044	-
	Vivi3g00909	510	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	174	182	IPR005836	GO:0005978\|GO:0008878
	Vivi3g00909	510	NCBIfam	glucose-1-phosphate adenylyltransferase	78	474	IPR011831	GO:0005978\|GO:0008878
	Vivi3g00909	510	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	289	299	IPR005836	GO:0005978\|GO:0008878
	Vivi3g00909	510	CDD	ADP_Glucose_PP	81	341	-	-
	Vivi3g00909	510	SUPERFAMILY	Trimeric LpxA-like enzymes	374	510	IPR011004	-
	Vivi3g00909	510	FunFam	Glucose-1-phosphate adenylyltransferase	61	375	-	-
	Vivi3g00909	510	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	84	103	IPR005836	GO:0005978\|GO:0008878
	Vivi3g00909	510	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	41	510	IPR011831	GO:0005978\|GO:0008878

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g00909	Vivi-Chr3	14864361	14867781	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g00909	K00975		-	gmx:100796717	863.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g00909	3	14864361	14867781	Vivi3g00909	3	14864361	14867781	ECH