Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00815 ATGGCAACCACGTCCCCTGAGAAACCCGCCGGAACACCGTCTTCCGCCGCCGAACTACCTCAACCTCAAATTCAAACTCAACCTCCGACTTCTACTCTGCCTCTCCCTCCTACAAAACCACCACCACCACTACCACCGCCGACGCCTAAACCGGAAGCCCCTTTACCCGACTCCAAACCCTCTGCCGACACCACCGTAATCCATATCCCAACTCACTCGCGATGGTTCTCATGGGACTCCATTCACGAATCCGAACTCCGAAACATTCCCGACTCGTCCAAGAACCCTAGGGTTTATAAATACTACAGAAACTCAATCGTCAAGTTTTTCAGATTCAATCCAAATAGAAAAATTACCTTCACCGATGTTCGCAAAACGCTAGTCGGTGACGTTGGTTCGATCAGGAGAGTCTTTGATTTTCTCGATGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCGGTTGCAAAACCTTTCAAATGGGAAGATAAAGACACCAAAACAGAATCAGCTTCAAATTCCACTGATTCTCCTCCAGTGCCTATCAAAGAAACTGCTAAGAGAATTTGCAGTAACTGCAAAAATCTCTGTGCCATTGCTTGCTTTGCCTGTGATAAGAATAATATGACACTATGTGCGAGGTGTTTTGTTCGCGGAAGCTATAAAGTTGGGACGAGTAATACTGATTTCAAGAGAGTGGAGATAAGTGAGGAGACCAAACCTGATTGGACTGAGAAGGAAACACTGAAACTTCTTGAATGTATTACGAATTTTGGTGATGATTGGAAGAGGGTTTCTCATCATGTTATTGGTAGGACTGATAAGGAATGTGTTGCTCGTTTTCTCAAACTTCCTTTTGGTGATCAGTTCATGCATTCTCAACGCTTCGAGTCTGCTCATCTCGCTGATGATGGTTGTTCTGATCTGTTGAAGCCCTCCGTTGATGCTGAATATGAATCAGGAACTGCTGGCTTGGATAGATCTAGTAAGAGGATGCGTCTCACGCCTCTTGCTGATGCTAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACAGAGGTTGCACAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCGATGTTTACAAGTCAACTAGAATTAATCATCGGTCATTTCCAAAGCAAGAGGCTGGTGTTGCATTAAATGGCATTAATGCTTCAGATTCTATCCAAGGATCTCTACTGCGTGCAAATTTAGAGCGTGAGAAGGAAGAATCAGATGTAGAAAACGCAATTTCTGAGATTGTAAAAGTTCAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAAGATTTAGACCTGCAAATTGAAAAAGAACGCCAACAGTTGGAGCAAGCGAAGAGTTTGTTTTTACTTGATCAGCTTAATCTTTTATTTCGCAAAACATCTGCATCAACTACCGGAGAAGGCAATCATGTAAAGAGGAATTGA 1473 0.4352 MATTSPEKPAGTPSSAAELPQPQIQTQPPTSTLPLPPTKPPPPLPPPTPKPEAPLPDSKPSADTTVIHIPTHSRWFSWDSIHESELRNIPDSSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLDAWGLINYHPSSSVAKPFKWEDKDTKTESASNSTDSPPVPIKETAKRICSNCKNLCAIACFACDKNNMTLCARCFVRGSYKVGTSNTDFKRVEISEETKPDWTEKETLKLLECITNFGDDWKRVSHHVIGRTDKECVARFLKLPFGDQFMHSQRFESAHLADDGCSDLLKPSVDAEYESGTAGLDRSSKRMRLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSDVYKSTRINHRSFPKQEAGVALNGINASDSIQGSLLRANLEREKEESDVENAISEIVKVQMKNIQDKLINFEDLDLQIEKERQQLEQAKSLFLLDQLNLLFRKTSASTTGEGNHVKRN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00815 490 Coils Coil 443 463 - -
Vivi3g00815 490 CDD SANT 243 284 IPR001005 -
Vivi3g00815 490 SUPERFAMILY Homeodomain-like 240 291 IPR009057 -
Vivi3g00815 490 Pfam SWIRM-associated region 1 409 472 IPR032451 -
Vivi3g00815 490 ProSiteProfiles SWIRM domain profile. 67 158 IPR007526 GO:0005515
Vivi3g00815 490 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Vivi3g00815 490 SUPERFAMILY Homeodomain-like 64 158 IPR009057 -
Vivi3g00815 490 MobiDBLite consensus disorder prediction 1 64 - -
Vivi3g00815 490 MobiDBLite consensus disorder prediction 27 56 - -
Vivi3g00815 490 Pfam SWIRM domain 70 149 IPR007526 GO:0005515
Vivi3g00815 490 ProSiteProfiles SANT domain profile. 238 289 IPR017884 -
Vivi3g00815 490 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g00815 490 FunFam SWI/SNF complex subunit SMARCC2 isoform C 238 289 - -
Vivi3g00815 490 Gene3D - 239 288 - -
Vivi3g00815 490 PANTHER SWI/SNF COMPLEX-RELATED 121 468 - -
Vivi3g00815 490 SMART sant 239 287 IPR001005 -
Vivi3g00815 490 Coils Coil 407 434 - -
Vivi3g00815 490 Pfam Myb-like DNA-binding domain 241 284 IPR001005 -
Vivi3g00815 490 FunFam SWI/SNF complex subunit SMARCC2 isoform c 73 154 - -
Vivi3g00815 490 Gene3D - 73 153 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00815 Vivi-Chr3 13279237 13282179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00815 190 366 EF-hand Containing Proteins AT3G07740 27.411 9.58e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00815 K11649 - gmx:100779777 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00815 3 13279237 13282179 Vivi3g00815 3 13279237 13282179 ECH