Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00662 ATGGCACTCATCAAATCAAGGGCACACTCTCACTTGCACCACTCTCTTTTCCAGCACTTACCATCCACTTTCAGACTATGTTCTTCCACACCTCTTCTTTCAAACGAGAACGACACTCCTCAAAACACCAACCTATCACCCGAAGACTCCACCATAATCGACAAATTTCACACCGTCATCAAAGACCACTACCGCAAAAACCCTAACCCTAACCCTAACCCTAATCCCGTTTCACCCTCACTCAATTTCTCCATCCCCGATCTCACCGTTGATTTCTCCAAAATCTCCACCGTCCATTCAATTTCCCCCTCCATCACCCGCCGCGTGATCGAAAAATGCGGCGGCATCCGCCACGGTATCCCATTCCACCAATCCCTAGCTTTCTTCAACTGGGCCACTACCCTAGAAAACTTCCCCTCCTCCCCGGAGCCTTACCACGAAATGATCGACCTTGCCGCAAAACTCCGACACTTCGATTTAGCATGGAGTTTGATCGATTTGATGAAATCGCGTGGCGTCAAAATAACCATAAGCACGTTCTCGATTCTCGTCCGGCGATACGTGAGGGCTGGATTGGCTGCGGAGGCGGTGCACGCGTTTAACCGTATGGAAGACTATGGTTGTACTCCTGATAAGGTTTCGTTTTCGATTGTTATTAGTAGTTTATGTAAGAAGAGAAGAGCCACTGAAGCGCAAACGTTTTTTGATAGTCTTAAGCATAAGTTTGAGCCTGATGTTATAGTTTATACTAGCTTAGTTCATGGTTGGTGTCGCGCTGGGGATATATCGAAAGCCGAGGAGGTTTTTAGTGATATGAAGGTGGCTGGTGTGAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGCTTTGTCGGAGTGGACAAATCACTCGGGCTCATGATGTTTTCTCTGAGATGATAGATGCTGGGTGTGATCCTAATGCTGTTACTTTTAATAGTCTAATGAGGGTTCATGTGAAAGCGGGTAGGACTGAGAAGGTTTTGCAGGTTTATAATCAAATGAAGAGACTTGGTTGTGCTGCGGATACGATTAGTTACAATTTCCTCATTGAGAGTCATTGTAAGGATGAGAATCTCGATGAAGCTGTGAAGGTTCTTGATACAATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTACTTTTAATTCGATTTTTGGATGCATAGCTGAGTTGCATGACGTGAATGGCGCGCATAGGATGTATGCTAAAATGAAGGAACTGAAATGCTTGCCTAATACGCTGACTTATAATATACTTTTGAGAATGTTTGTTGACTCGAAATCTATTGATATGGTTTTGAAGTTGAAAAAGGAAATGGATGAGAATCAAGTTGAACCTAATGTGAATACTTACAGGATTTTGATTATGATGTTTTGTGAAAAGGGGCACTGGAACAATGCATACAAGTTCATGAAGGAAATGGTCGAAGAAAAAAGCCTAAAGCCAAATCTGTCGATTTATGAAACGGTTTTGGAGCAACTGAGGAAGGCTGGACAGCTCAAAAAGCACGAAGAGTTGGTCGAGAAGATGGTTTCCAGGGGATTCGCCGCTCCTCGCCCTTTGTAG 1590 0.439 MALIKSRAHSHLHHSLFQHLPSTFRLCSSTPLLSNENDTPQNTNLSPEDSTIIDKFHTVIKDHYRKNPNPNPNPNPVSPSLNFSIPDLTVDFSKISTVHSISPSITRRVIEKCGGIRHGIPFHQSLAFFNWATTLENFPSSPEPYHEMIDLAAKLRHFDLAWSLIDLMKSRGVKITISTFSILVRRYVRAGLAAEAVHAFNRMEDYGCTPDKVSFSIVISSLCKKRRATEAQTFFDSLKHKFEPDVIVYTSLVHGWCRAGDISKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRSGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCLPNTLTYNILLRMFVDSKSIDMVLKLKKEMDENQVEPNVNTYRILIMMFCEKGHWNNAYKFMKEMVEEKSLKPNLSIYETVLEQLRKAGQLKKHEELVEKMVSRGFAAPRPL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00662 529 Pfam PPR repeat 148 173 IPR002885 -
Vivi3g00662 529 Pfam PPR repeat 317 347 IPR002885 -
Vivi3g00662 529 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 180 456 - -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vivi3g00662 529 Gene3D Tetratricopeptide repeat domain 108 233 IPR011990 GO:0005515
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 490 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 352 386 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 458 491 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 145 176 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 282 316 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Vivi3g00662 529 NCBIfam pentatricopeptide repeat 247 281 IPR002885 -
Vivi3g00662 529 Pfam PPR repeat family 244 293 IPR002885 -
Vivi3g00662 529 Pfam PPR repeat family 350 394 IPR002885 -
Vivi3g00662 529 Pfam PPR repeat family 419 467 IPR002885 -
Vivi3g00662 529 Pfam PPR repeat family 185 224 IPR002885 -
Vivi3g00662 529 Gene3D Tetratricopeptide repeat domain 447 521 IPR011990 GO:0005515
Vivi3g00662 529 Gene3D Tetratricopeptide repeat domain 379 446 IPR011990 GO:0005515
Vivi3g00662 529 Gene3D Tetratricopeptide repeat domain 310 378 IPR011990 GO:0005515
Vivi3g00662 529 Gene3D Tetratricopeptide repeat domain 237 309 IPR011990 GO:0005515
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vivi3g00662 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00662 Vivi-Chr3 11032703 11035241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00662 135 525 Glycosyltransferase AT1G05670 25.510 1.71e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00662 - - gmx:100800850 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00662 3 11032703 11035241 Vivi3g00662 3 11032703 11035241 ECH