Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00657 ATGTTATCGCTTAACACCTCATGTACATGTTACGGTGTTTCCACAGCAACAAGAGCATTTCTATTTCAGTTTCGAACTTCACCTTCACCATTTTCCTTCTCTCCCACTAAGAATTTTAAATTTCGTTCTGGCACTGCGAGAGCCGTTTCTGGTTTTTCCGATGAGTCCAACTCTACCGGAGAACCAAAATTGAATTACGCCGGCGTGCGGTTGGAGGAGATCGTCGACGATGGAATCAAATCTGGAAAACTGAGACTCGACAGCTGGATCTCTTCTCGCATCAATGGAATCAGTAGGGCTCGCGTTCAGTCGAGTATTAAAGCGGGACTTGTTCACGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAATGCACAATTGCGGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTTTGGATATAGTTTTTGAAGATGAGCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGAAATACGTCTGGGACACTTGTCAATGGCATCCTTCACCACTGCAACCTGCCAAATGTTGAATATTCTAAAGAGGAAGCTCTTTCAGATCCAGAAGATTTTGATGATGAACTTAATGGCTTCTCATCTAAGGCAACTTCTTGTGAAGGGTTAGATTCTAGATTGTCTTTGCCTTCAATTCGCCCAGGGATTGTACATAGATTAGACAAAGGCACGAGTGGGTTGCTAGTTGTGGCCAAGGATGAACATTCTCATAAGAAATTGTCTGAACAATTCAAGCTACGCACTATTAAGAGGGTCTATGTTAGTCTCACTGCTGGGGTACCTACTCCAGTTGCTGGGCGTGTTGAGGTTCCGGTTGGTCGGGATCCTAATAACCGGCTTCGGATGACTGCTGTTGCTGGAGCAGTTAATTCTATAAAGGCTCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAGGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATCTGGGTGTACCTCTGCTTGGTGATGAGGTATATGGAGGGACGAAAAGCATGGTCTTGTCACTGCTAAGACCACGAACAACCCCGGGTTTGCAAGGTGAAATGGTTAAAGTAGTTTCTGAGCTAGACAGGCCTTGTCTTCATGCTTTGACTCTTGGGTTTGAGCATCCTCATACAGGGGAACAGGTGCACTTTTCATGCGAACCCCCGGTAGATTTTAATGAGATTTTAAGCCAGCTTCGTAGAATTGGCAGGGATAGGATTTCTTTGTCAAAAGACAAATTTGTAAAAGGGGTATTGTAA 1365 0.4498 MLSLNTSCTCYGVSTATRAFLFQFRTSPSPFSFSPTKNFKFRSGTARAVSGFSDESNSTGEPKLNYAGVRLEEIVDDGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVFEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEYSKEEALSDPEDFDDELNGFSSKATSCEGLDSRLSLPSIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGAVNSIKARHAASRYKVIEILAGGSCALVEWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPGLQGEMVKVVSELDRPCLHALTLGFEHPHTGEQVHFSCEPPVDFNEILSQLRRIGRDRISLSKDKFVKGVL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00657 454 CDD PseudoU_synth_RluA_like 159 408 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi3g00657 454 Gene3D Pseudouridine synthase 141 423 - -
Vivi3g00657 454 Gene3D - 68 140 IPR036986 GO:0003723
Vivi3g00657 454 ProSitePatterns Rlu family of pseudouridine synthase signature. 239 253 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi3g00657 454 Pfam S4 domain 85 131 IPR002942 GO:0003723
Vivi3g00657 454 FunFam RNA pseudouridine synthase 2 chloroplastic 69 139 - -
Vivi3g00657 454 CDD S4 85 163 - -
Vivi3g00657 454 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Vivi3g00657 454 SMART s4_6 84 149 IPR002942 GO:0003723
Vivi3g00657 454 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Vivi3g00657 454 Pfam RNA pseudouridylate synthase 158 353 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi3g00657 454 SUPERFAMILY Pseudouridine synthase 144 435 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi3g00657 454 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 84 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00657 Vivi-Chr3 10995741 11001428 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00657 K06180 - gmx:100810383 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00657 3 10995741 11001428 Vivi3g00657 3 10995741 11001428 ECH