Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00634 ATGCATCAAGGAGATTACACCTCCGCTCCATACTACCAATTCCCTCACATGCAAAACCCCAACCCTACGCCACCGCCTCAATCCGATCCAATTCCCAACCACTACGCTTCTGCACCACCGTTCACTCCCAATTACGATTACCCTAACCCTGCCTATTCTCCATATCCTCCTCATAATCCCGATCCTGTTCCATCCTCAAACCCTAATTTCAATCCTCAATTCGACTCCAATCCTCCTTATCAACCACCACCGTCACAACAACCATATTATCCTCCGTATGATCAGCATCAAGCACCTCCAAATTATGCCCCTCCTAACCCTAACCCTAATCCCAATCCTATTCCGAATTCATATAATCAGCCTCCGGCTCCTTATTCCCACATTCACACCGCATCTTCTGTTCCTCCGATTCCGACATACGAAAGCCAATACGAGAATCCGGTGAAATCTGATTACGGTGGTGGTGCTTATTTTGATGACAGGTACGGAGGAAGTTTTAATCGGAGCCAGTCCGATTTAGGATCGGAATTATATGGTAAGCGTCATGATGGTGGTTTGTCTAGATATGAATCCGGCGGTGCTGGTGGTGGTGGTTTGTCTAGATATGATTCCGTTGGTGGTGCTGGTGGCGATGAAGGTTATGGAGATGGCGTGTATGCTTATCAAGGGGGAAAAGTGGAACCTTATGGTGCCCGTGGTACGGGTTCTAAATCTTCTACTTGGTCTTCTACGCCGTCGTTTGATGATTTTGGGAGACCGATTAGTTTTAATACTCCGAAGGAATCTTCGGTGGCTAGTAAGATTGTGAAAGCAGTTCCTAAGGTTGATACTCAGGAAGATGTGAAAAGTGGGGTGCAGAAGTTTCGTGTCAAGATGTTGGCAGAGAGTGGTGGTCAGAGCACAATGGATGTTCTATGCCAGGTTGGTTTGGATGGCCTTCGAATGCTAGATCCAAATACCAGTAGGACTTTGAGAATATATCCTCTTGAGAACATTACTAGATGTGATAGATTCGATTCAACTACCTTTGCATTTTGGTCGAAGAGCCCTGTAGACATTGAGCCAAGACGAATCAGATTGCAGTCTAATAGTTACACTACAAACACACTTTTGGATACAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAACAGGAGGCCTGCTGAATCATTGAAAACAAATGAACAGTCTACTGAAAGAAAGAAAGGCCTTGGTGATTGGATGAATATGATTAAACCTGCCAATGAAGAAAAAGATCATTGGGTCCCAGATGAAGCAGTCACAAAATGCACCGCATGTGGCACTGATTTTGGGGCTTTTAACCGCAAGCATCACTGTAGGAACTGTGGTGATATTTTCTGCGACAAATGTACACATGGTAGAATTGCTCTAACTGCTGAAGAGAATGCTCAGCCAGTACGAGTTTGCGACAGATGCATGGCAGAAGTGACTCAGAGGCTGATCAGTGCCAAAGAATCATCAAGTAAACCTCTTTTGCAGAGTCACGAGGATCTTGCTCGGAAACTTCAGGAGGAGCTGGAGAGAAATCGGAAGACATCAGGATCAGGTTCCAAGTCTGACGGAACTGGAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTTCAGGTACCTACCTCAGGTTCAGAGACCATCGAGTGTGGAGTTTGCCAGCATCCATTTCTTGTGAGTTCGTATTGA 1725 0.4568 MHQGDYTSAPYYQFPHMQNPNPTPPPQSDPIPNHYASAPPFTPNYDYPNPAYSPYPPHNPDPVPSSNPNFNPQFDSNPPYQPPPSQQPYYPPYDQHQAPPNYAPPNPNPNPNPIPNSYNQPPAPYSHIHTASSVPPIPTYESQYENPVKSDYGGGAYFDDRYGGSFNRSQSDLGSELYGKRHDGGLSRYESGGAGGGGLSRYDSVGGAGGDEGYGDGVYAYQGGKVEPYGARGTGSKSSTWSSTPSFDDFGRPISFNTPKESSVASKIVKAVPKVDTQEDVKSGVQKFRVKMLAESGGQSTMDVLCQVGLDGLRMLDPNTSRTLRIYPLENITRCDRFDSTTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGNRRPAESLKTNEQSTERKKGLGDWMNMIKPANEEKDHWVPDEAVTKCTACGTDFGAFNRKHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVCDRCMAEVTQRLISAKESSSKPLLQSHEDLARKLQEELERNRKTSGSGSKSDGTGRRMKEVACPICTVHLQVQVPTSGSETIECGVCQHPFLVSSY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00634 574 PANTHER PROTEIN FREE1 1 573 IPR045893 GO:0036258|GO:0043130
Vivi3g00634 574 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 487 IPR017455 -
Vivi3g00634 574 MobiDBLite consensus disorder prediction 515 534 - -
Vivi3g00634 574 FunFam Zinc finger, FYVE-type, endofin 414 492 - -
Vivi3g00634 574 Coils Coil 502 522 - -
Vivi3g00634 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 492 IPR013083 -
Vivi3g00634 574 MobiDBLite consensus disorder prediction 17 67 - -
Vivi3g00634 574 MobiDBLite consensus disorder prediction 1 152 - -
Vivi3g00634 574 SMART fyve_4 419 488 IPR000306 GO:0046872
Vivi3g00634 574 SUPERFAMILY PH domain-like 286 350 - -
Vivi3g00634 574 CDD PTB 269 345 - -
Vivi3g00634 574 SUPERFAMILY FYVE/PHD zinc finger 422 489 IPR011011 -
Vivi3g00634 574 MobiDBLite consensus disorder prediction 75 120 - -
Vivi3g00634 574 Gene3D - 271 344 IPR011993 -
Vivi3g00634 574 MobiDBLite consensus disorder prediction 121 146 - -
Vivi3g00634 574 Pfam FYVE zinc finger 423 487 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00634 Vivi-Chr3 10618355 10624347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00634 415 488 EF-hand Containing Proteins AT3G14270 37.500 8.84e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00634 - - gmx:100794840 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00634 3 10618355 10624347 Vivi3g00634 3 10618355 10624347 ECH