Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00562 ATGAGTAAAAGACCGCCACCTGATCCTGTGGCAGTTCTTCGAGGCCATCGCGCTTCAGTCACCGACATTTCTTTTCATCCCTATAAGCCAATACTATTCTCCGGTTCCGCTGATGGTGAACTGCGAATTTGGGATACATTTCGACGCCAAACACTTTCATCAGCATGGTTACATAGTGCCGCACATGGGATTGTTGCTGTTGCCAGTAGTTCTTCACTTGGAACCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGATTTTGATGATGCTGATTTGTCAAGGATTCCATCAGTTACAATCAAGACAAACAGTTACCACTTTTGTAAATTTTCCCTGGTTAAGAATCATTCTACTTGGTTAAAAGAAGGGGAAGCATCAAAAGATTGTCTTGAAACAGAAGAGGCTCATACTAATCAAAGTTGTTCTGAAAGCTCTCAAGGGCTACCGTATGTGGCTTTGTCGGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAGAGATTTGCACGACTACCTTCAAATATTGGCAGTAACTCTTCAAGTGTTAGCAGTAAAGGGATGTGCATGGCACTTCAATTGTTTGTACCACCTGAATCACAAGGATTTTTAAATGTCATAACTGGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCAGGAGTTCCAATAAGCTCTGTGAAATTCCATTCTGAGCCAGTTCTGAGCATCTGCATTGACGGGTCTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGAGAGAATTGTGATGTATAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCAAATTGGAGCGACCTGGAATCTCAGGCACCTCAATTCGGCCTGACAACAAAATTGCTGCCACAGCTGGCTGGGACCACAGAGTAAGGATATATAATTATCGCAAAGGAAATGCTTTAGCTGTACTCAAGTATCATCATGCCACGTGCAATGCTGTAACTTTTTCCTCGGATTGTAAGCTTATGGCCTCTGCATCGGCCGACACAACGGTGGCGCTATGGGAATTGTATCCTCCTCGAACATGA 1095 0.4393 MSKRPPPDPVAVLRGHRASVTDISFHPYKPILFSGSADGELRIWDTFRRQTLSSAWLHSAAHGIVAVASSSSLGTNKFVSQGRDGTVKVWDFDDADLSRIPSVTIKTNSYHFCKFSLVKNHSTWLKEGEASKDCLETEEAHTNQSCSESSQGLPYVALSGENSSEVEIWDLKSAERFARLPSNIGSNSSSVSSKGMCMALQLFVPPESQGFLNVITGYEDGSMLWWDVRNPGVPISSVKFHSEPVLSICIDGSCKGGISGAADERIVMYSLDHSSGTCVVNKEIKLERPGISGTSIRPDNKIAATAGWDHRVRIYNYRKGNALAVLKYHHATCNAVTFSSDCKLMASASADTTVALWELYPPRT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00562 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Vivi3g00562 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 364 - -
Vivi3g00562 364 Gene3D - 208 361 IPR015943 GO:0005515
Vivi3g00562 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vivi3g00562 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vivi3g00562 364 Pfam WD domain, G-beta repeat 323 357 IPR001680 GO:0005515
Vivi3g00562 364 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vivi3g00562 364 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vivi3g00562 364 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vivi3g00562 364 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Vivi3g00562 364 SUPERFAMILY WD40 repeat-like 4 358 IPR036322 GO:0005515
Vivi3g00562 364 PANTHER TRANSDUCIN BETA-LIKE 3 4 359 - -
Vivi3g00562 364 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Vivi3g00562 364 SMART WD40_4 48 91 IPR001680 GO:0005515
Vivi3g00562 364 SMART WD40_4 277 316 IPR001680 GO:0005515
Vivi3g00562 364 SMART WD40_4 6 45 IPR001680 GO:0005515
Vivi3g00562 364 SMART WD40_4 319 358 IPR001680 GO:0005515
Vivi3g00562 364 SMART WD40_4 131 170 IPR001680 GO:0005515
Vivi3g00562 364 SMART WD40_4 231 270 IPR001680 GO:0005515
Vivi3g00562 364 Gene3D - 6 201 IPR015943 GO:0005515
Vivi3g00562 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 364 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00562 Vivi-Chr3 9359774 9367142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00562 10 97 Miscellaneous Gene Families AT5G08390 30.682 1.79e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00562 K24770 - gmx:100800482 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00562 3 9359774 9367142 Vivi3g00562 3 9359774 9367142 ECH