Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00540 ATGGGAGCTTGTGCTACATTTTCTCCGTGGACTCGTGAAGACGATCTTTTACTCAAGAACTCCGTTGAGAGTGGTGCTTCTTTGGAGGCACTTGCGAAAGGTGCGGTGCAGTTTTCTAGAAAATATAGTATTGGGGAAATAAAAGAGAGATGGCATTCTATTTTCTTCGACGCTGTTGTATCCTCGGAAGCCTCTGCTGCTATGATACGTTTAAAAGAACAGGATATTGTTTCTGTTAAGAGGAAACCTGTCAGGCCTCGGGATTCTTACTATGCAATGCGTAAAAGAATGCGTAGAGAGGCACAAACTTCGATGGACTTCAATTTTCTGGTTGAACCAGAAAATGAGGATTATGCTGTAAATGGAGATCAGTCTTTGCCTCTAAACTTTGTACCTGAGGGTTCAACTTGGAATCAATTTCCAAATCATGATACGGCAAACTATGGTCTTCCGGAAAATATTATGGATGCTGATGTTGCTGTTAATGGAGTTACTGATCAAGTGTTTTACACTGGAGTTGGTGATACACTTGGAGAGAATTTTCTCATTGGGCAAAACCATATGCCCGAGGAGGAACATCAAATATTTCAAGATAACGTGCCTCTGAATGGAGCTGCCGAGGAAGTGGGTGTTCCGATAGACTTAGATATCGAAAACTTTATCAGAGATGAGGATGTAGAGGAAATACCTTTGTCTTCATTTCACCCAATCAACAATAACCCTGCAAATTTGTGCTCCGAGTTTGATGAAGATTACCTATTTGATTCATCTGAGTTAGAGTGTGGAGACTCATTTGACGATATACAGTTATCTTCACTTCATGACATTCCGGGCATTCCGGACTGGAGAACAGAAGAACATGGCGGTATTCCATGTCATGGTTCAAAAGATTCGACTGCTTGCGAGGATGGTTACCTAAAAGAATTGTCCAATGATCTCTTAACCTTCACTGGCGAGGAAGAGCTATATCTGATGGATTATGTCGAAAAAGATGGGATTGGTAAGTCTTATTATGATGGTCTGAGTTCACTTTTAGTAAACTCTCCGATTGATGGTTCTTCTGATCAGATACCTGAAACGGATGGAGCAGAGTTATCACTGATCCCACCCGAAGAAGTTAAAAATTCGTGTGTTCCACGTCACACACACAAAAATGACAGTGCAGGAACGGCTGAAACAGATCTGTTAGCGGCCTTTGATGCACATGTTAATGATCTGTCAGCTTCACGTGGTGCTCGTGCAGAAGTAGATGACAAATCAGATTTCCAAATGCCAATTTCTGCCTCAGCTAAAGTCCCTCAATTTCCTGAAATAGTTAATGGAGTTATTATCTGTAAAACAAATACTGAGGACCCAGAAATTCCGTCCAATGATGATGCTTCTCTACCCTTTAATGAGCCTCCCCCAACAAATTTTTGTTCATCCGAACCAGCTGTTACAAAATCTAATAAACCAGTTCCATCATCTGTTAATGATTGTGGATATAGAGCTAGCAGAAGAGGTAAAGTTTTGATGCAGGTTGAACAAAAAAACTCCACAGGAGCTCATGTGTCTTCCCAGACAACAGGATCCCAAATGAATTCAGGGCCTGTTTCTGGTTCTAAAATAAAATGCGAGTTACCTAATAACCATTCATCACACACAATGTCTAAGAGTGCAGCTATTGCTTCCGGTGGCTTAGGCGGAGGCAACAGTTTAACAAACAAAACTCATGCTGCTCTACATGCAATTCCTAAGGAAAAGCTTGTCAATGCTAGCTCTGTAAGGCATCTAAGCAGTAATGTCACAAGTTTGTCACATGAGAAACCAGCCCTTGGAAATCGCTTCATAGATCAAGTCCAACCTAATGGTTCTTGCTTGAAACAGGAACCAAATGTAGCTTTGCCAGTTGAAGATAATAATTTGCAACATGCTGAAATGGGATTTACAGAAGTTCTAAGGTCAGAGCTGGTGGTCAATCCTGAAAAGTTTGACGAGGAATATCAATATATCGAAAGTGATGATGATATTCCTTATTATTCTGATATAGAGGCGATGATACTTGATATGGACTTGGAACCTGATGTTCAGGATTTATATGAGAATGAAGAAGTATCAAGATATCAACACGAGGAAACTAAGCGGACTATCATAAGGCTGGAGCAGGGTGTTCACTCTTCTACGCAAAGAGCCATGGCTTTACATGGAGCATTGGCTCTATTATATGGCCGCCACTCAAATTACTACATCAAGAAACCCGAGGTTTTACTTGGGCGAGCAACAGAAGGTGTTCATGTAGATATTGACTTAGGCAAAGGAGGTGGTACCAATCTAATATCTAGACGCCAGGCAATCATTAAGATGGATAAAGATGGATCGTTCTACATTAAAAATATTGGCAAGAGTTCAATGCTAGTAAATAACAGAGAGTTGCACACTGATCAATCTCAAAGACTGCTTTCCCATCATCTGATTGAGTTGAAGGGCATGCAATTGATATTCGAGATAAATCAAAGTTGTATGAAGCAGTAG 2511 0.407 MGACATFSPWTREDDLLLKNSVESGASLEALAKGAVQFSRKYSIGEIKERWHSIFFDAVVSSEASAAMIRLKEQDIVSVKRKPVRPRDSYYAMRKRMRREAQTSMDFNFLVEPENEDYAVNGDQSLPLNFVPEGSTWNQFPNHDTANYGLPENIMDADVAVNGVTDQVFYTGVGDTLGENFLIGQNHMPEEEHQIFQDNVPLNGAAEEVGVPIDLDIENFIRDEDVEEIPLSSFHPINNNPANLCSEFDEDYLFDSSELECGDSFDDIQLSSLHDIPGIPDWRTEEHGGIPCHGSKDSTACEDGYLKELSNDLLTFTGEEELYLMDYVEKDGIGKSYYDGLSSLLVNSPIDGSSDQIPETDGAELSLIPPEEVKNSCVPRHTHKNDSAGTAETDLLAAFDAHVNDLSASRGARAEVDDKSDFQMPISASAKVPQFPEIVNGVIICKTNTEDPEIPSNDDASLPFNEPPPTNFCSSEPAVTKSNKPVPSSVNDCGYRASRRGKVLMQVEQKNSTGAHVSSQTTGSQMNSGPVSGSKIKCELPNNHSSHTMSKSAAIASGGLGGGNSLTNKTHAALHAIPKEKLVNASSVRHLSSNVTSLSHEKPALGNRFIDQVQPNGSCLKQEPNVALPVEDNNLQHAEMGFTEVLRSELVVNPEKFDEEYQYIESDDDIPYYSDIEAMILDMDLEPDVQDLYENEEVSRYQHEETKRTIIRLEQGVHSSTQRAMALHGALALLYGRHSNYYIKKPEVLLGRATEGVHVDIDLGKGGGTNLISRRQAIIKMDKDGSFYIKNIGKSSMLVNNRELHTDQSQRLLSHHLIELKGMQLIFEINQSCMKQ 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00540 836 MobiDBLite consensus disorder prediction 473 489 - -
Vivi3g00540 836 ProSiteProfiles Forkhead-associated (FHA) domain profile. 748 804 IPR000253 GO:0005515
Vivi3g00540 836 MobiDBLite consensus disorder prediction 473 493 - -
Vivi3g00540 836 SUPERFAMILY SMAD/FHA domain 731 830 IPR008984 GO:0005515
Vivi3g00540 836 PANTHER MICROSPHERULE PROTEIN 1 6 836 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vivi3g00540 836 Pfam FHA domain 749 820 IPR000253 GO:0005515
Vivi3g00540 836 Pfam N-terminal region of micro-spherule protein 10 84 IPR025999 -
Vivi3g00540 836 Gene3D - 688 836 - -
Vivi3g00540 836 SMART FHA_2 747 804 IPR000253 GO:0005515
Vivi3g00540 836 MobiDBLite consensus disorder prediction 510 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00540 Vivi-Chr3 9117238 9122505 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00540 - - tpra:123898987 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00540 3 9117238 9122505 Vivi3g00540 3 9117238 9122505 ECH