Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00534 ATGAAGGAAGAGAAAGAGAGAATAAAGATGGAAGAAGAAAACGGTTACGCCGGAAGTAGCGGTTCAACTCTGGAGACTTCAAAGGCGGAGAGATCCGTGTGGTTGATGAAGTGTCCGGTGGCTGTTGCTAAGTCATGGCAGAATCATCCTCCTTCTCAACCGCTTTCTAAAGTCGTTTTCTCTATTGATCCGTTGCTTCCTGAAGACGATCCTGCTCATCTTCAGTTTACAATGGAGATGTCTGGCACTGATTCTGTGAATATGGCGAAAGCTTATTCTCTGAATATGTTTAAAGACTTCGTTCCTATGTGCATCTTCTCTGAGACAAGTGAAGGTGACAAGGTTTCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAACCACGCCATGAAAACATTGATGATTATGGAAAATTGTGCCGGGAGAGGACAAAGAAATCTATGATTAAAAATCGACAAGTACAGGTTATTGAGGATATTCGTGGAGTCCACATGAGGCCAATGCCTGGAATGGTTGGCTTAGTTTCAACCAATTTTAAGGATAAAAAGAGGACACAACCAGTCAAACAAACTGATACAAAGAGAACAAGAAGAGACCGGGGAGAGCTGGAGGATATTATGTTCAAACTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAACTTGTCCAAGAAACTGATCAACCCGCGCAATTCTTGAAAGAGATCTTGAATGAGCTGTGTGTATACAATAAAAGAGGTGCCAACCAAGGAACTTACGAGCTGAAGCCTGAATACAAGAAATCGGTTGAAGAAACAAATGCTGAATAA 813 0.417 MKEEKERIKMEEENGYAGSSGSTLETSKAERSVWLMKCPVAVAKSWQNHPPSQPLSKVVFSIDPLLPEDDPAHLQFTMEMSGTDSVNMAKAYSLNMFKDFVPMCIFSETSEGDKVSMEGKVEHKFDMKPRHENIDDYGKLCRERTKKSMIKNRQVQVIEDIRGVHMRPMPGMVGLVSTNFKDKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEETNAE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00534 270 FunFam General transcription factor IIF subunit 2 196 263 - -
Vivi3g00534 270 Pfam TFIIF, beta subunit HTH domain 198 261 IPR040450 -
Vivi3g00534 270 Gene3D - 196 263 IPR036388 -
Vivi3g00534 270 SUPERFAMILY Rap30/74 interaction domains 23 129 IPR011039 GO:0006367
Vivi3g00534 270 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 17 262 IPR003196 GO:0005674|GO:0006366|GO:0006367
Vivi3g00534 270 SUPERFAMILY "Winged helix" DNA-binding domain 196 262 IPR036390 -
Vivi3g00534 270 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g00534 270 CDD TFIIF_beta 24 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00534 Vivi-Chr3 9028590 9032017 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00534 K03139 - gmx:100784080 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00534 3 9028590 9032017 Vivi3g00534 3 9028590 9032017 ECH