Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00401 ATGGGCGAAGAAACACAACTTCAACCACAATCCCTAACCGGAACTCAAATTCAACCGCAATCTCAGCCACAACTGGAGGTTTCGGTTTCGGTTTCTTCCGATCACATCATCAACGCCACCACCGTCGTCGGAGTCGACGGTATTATCCCCGTTGAGTCCGAACTCAGCAATGTTCCTCCACACACAAACTCACCGGCAACCAAAATCCCTCTCCGTCCTCGAAAGATCCGGAAAGTTTCTCCGGACCCGACAACCTCCGAATCGCAAACGGAAATCCCTAAACCGGTCAATTCCGGTGGGAAATCGAATGGACGGGGCAACAGCAACAAAGCGGTTCAACAACAACAACAGCGAGAACGAGCCCTAGCGCTTCCGAGGATTGTTGCTAGATCGCTTTCGTATGAAGGTGAGGTTGAGATGGCGATTCGTTACCTTCGTACTGCTGATCCGCTGTTATCTCCTCTCATTGATATTCATCAACCGCCTACCTTTGATAGTTTCCATACTCCGTTTCTTGCCCTAACTCGAAGCATTCTTTATCAGCAACTCGCGTTTAAGGCTGGAACTTCGATTTATACGCGATTTATTGCTCTCTGTGGTGGTGAAGCTGGTGTTGTTCCGGAGACTGTGCTTGCTTTGAATGCTCAGCAGCTTCGTCAAATTGGGGTTTCTGGGAGGAAGGCGAGTTATCTACATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCCATTGTAAATATGGATGATAAGTCGCTTTTTACGATGCTGACTATGGTGAATGGGATTGGGTCTTGGTCTGTTCATATGTTTATGATATTCTCGCTGCATAGACCGGATGTTCTTCCGATTAATGATCTTGGTGTTCGGAAAGGGGTTCAGATTCTTTATAATCTTGATGATTTGCCTCGGCCGTCTCAGATGGAGCAGTTGTGTGAGAAGTGGAGACCTTATCGGTCGGTTGCTTCGTGGTATATGTGGAGGTTTGTTGAGGCGAAGGGAACTCCTTCGACGGCAGTGGCTGTTGCTACTGGGGCTGGATTGCAGCAGCATCAGATGGAGCATCACCAACAACAGCAACAGCAGCAGCAGCAGCATCCTTCGCAACAACAGCTTATGGATCCCATGAATGGCATGTTTAATATTGGGTAA 1161 0.4798 MGEETQLQPQSLTGTQIQPQSQPQLEVSVSVSSDHIINATTVVGVDGIIPVESELSNVPPHTNSPATKIPLRPRKIRKVSPDPTTSESQTEIPKPVNSGGKSNGRGNSNKAVQQQQQRERALALPRIVARSLSYEGEVEMAIRYLRTADPLLSPLIDIHQPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALNAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMEQLCEKWRPYRSVASWYMWRFVEAKGTPSTAVAVATGAGLQQHQMEHHQQQQQQQQQHPSQQQLMDPMNGMFNIG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00401 386 Gene3D Hypothetical protein; domain 2 168 281 - -
Vivi3g00401 386 FunFam DNA-3-methyladenine glycosylase II 167 281 - -
Vivi3g00401 386 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 52 342 - -
Vivi3g00401 386 Pfam HhH-GPD superfamily base excision DNA repair protein 176 319 IPR003265 GO:0006284
Vivi3g00401 386 SMART endo3end 179 334 IPR003265 GO:0006284
Vivi3g00401 386 SUPERFAMILY DNA-glycosylase 161 332 IPR011257 GO:0003824|GO:0006281
Vivi3g00401 386 MobiDBLite consensus disorder prediction 53 117 - -
Vivi3g00401 386 MobiDBLite consensus disorder prediction 350 379 - -
Vivi3g00401 386 FunFam Probable DNA-3-methyladenine glycosylase 2 267 331 - -
Vivi3g00401 386 CDD ENDO3c 171 332 IPR003265 GO:0006284
Vivi3g00401 386 MobiDBLite consensus disorder prediction 350 386 - -
Vivi3g00401 386 Gene3D - 144 331 - -
Vivi3g00401 386 MobiDBLite consensus disorder prediction 1 30 - -
Vivi3g00401 386 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00401 Vivi-Chr3 6988595 6990291 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00401 K01247 - gmx:100790760 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00401 3 6988595 6990291 Vivi3g00401 3 6988595 6990291 ECH