Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00311 ATGACTAAGAGATTTAAGAAATCAGACTCAAATAGGAGAGGAAAAAGAAGAAAGTCATCCGGTGGTTTTTCGCCGTTGGATGCACCTTCTTCCAGTGTTGTATTCCGTTTGCTATGTCCTGCTACTAGAATTGGTGGTGTTATTGGTAAAGGCGGTTCCATTATTTCACAAATTCGCCAAGAAACTGGCGTGAAAGTTAAGATTGAAGAGCCTGTCCCGGGATGTGATGAAAGAGTTATAACTTTTTTATGTTTGGATAAAGAGAATGAAGAAGGTAGCGCCGAGCAAGGAAAGGAGGTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATGATGATAATAACAATAATGATGATAATAATGATGATGGTGAGAGTGAAAACAAGGGGAAGGATGATGAAGGGAAAGATAATGGGGATGATAATGAAGATAAAGATTCGGTTTCTGTTGAAGATTCGCAGAGCGAGAAGGGGAGTTCTAATTTGTCTATTCTGAAGGCTGTGACACTGGTTTTTGAGAGGATGGCTCAAGGAGTAGAGAATAATGGTGAAGGTGGTGATGAAAATAAAAAAGCTTCGTATTTTTCTTTAAGGCTACTTGTGCTTTGTAATCAAGTTGGATGCATTTTGGGAAAGGGTGGAAGTGTGATAAAGAGAATGGCAGCTGATAGCGGGGCGCAAATTCGGATCCTTTCCAAAGAAGAAATTCCCTCGTGTGCGACGGATTCTGATGAGCTAGTTCAGATCACAGGAGGAGTAGAAGTTGTCAAGAAAGCTCTTCAATCCGTTTTTCAGCAGATTTTGGATAATCCATCTCGTGATCATGAATCGCTCTCCACCAACCTTACTGGGCCGTCATCTCATTCCTTTGGTCAATTCCAACAAAATAAACGAACTTTTGCTGGTCAAGGAGCATCCTTTGCTACTGGGGCTAATGAAATTCCTGTTTTCCATTCTGCTCCAATGATTCCCAAATTTCATGAAGGCCCCATCCGTGGTCGCTCGAGGCTTCCACCGGAAATACTTACTTTCCGTTTATTGTGTCCTTCCGAAAATGTTGGAAACATAATTGGCAAAGGTGGATCAATAATTAAGACCATGCAACAAGAAACAGCTAGTGAAATCAAGGTTATAGAAGGAAACCCAGGTTCAGAGGATTGCGTTATCGTCATATCTGGTCCAGCGCACCCAGATGATAGAATATCTCCTGTGCAAGAGGCCATATTTCGTGTGCAAAATAGAATATCCAGGGCTTTTCCTGATACCAAAGCGCAAAGTATGTTATCAAGGATTGTTGTTTCTTCCAATCATATAGGCTGTCTCCTTGGGAAGGGTGGTTCCATTATTGCTGAAATGAGGAATTTATCAGGTGCCCATATTCGTATGTTGGGAAAGGATAAGGGTCCAAAGTGTGTTTCAGAAGATGATGAAGTAATCCAGGTAAATGGAGAAATCGAGGCAGTGCATGATGCTCTTTTGCAAATAACAATGAGATTAAGAAATCATTTCTTTCGAGAAGCATTTCCGTCTGCTGATTTTCCTTCAAATTCAGGATTTCTTGATCAACAGTCTTCGTTCCCACCTTATTTGGGAAGGCGGGGACTTTCACCTCCCAGAATGTATTCTGACCTAGGTCCACCACCTCTGCATGCTGGTTTTCCCCTCGATGATCACCCTCATTTTATGAATAACATACATAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTAAGGGGTTACTTGAAGGTGGTGGACGCATGGGCTTGCCAGAATTTGCAGGGGGTCCTCGAAGAATTTCTGGATTTGCAGGAGGAAGCCTACCAATTATCACTAGTACCACCGTTGAAGTTGTTGTTCCCCGAGCTCTGGTGCCTGTAATATACGGGGAAGATGGTGAATGCCTGAAACAAATACTCCAGATATCTGATGCAAATGTTACTATTACTGATCCAAAACCTGGAGCCGCGGAAACTAAAATTATAATATCTGGAACCCCGGAGCAAACTAATGCTGCTCAAAGTCTTATTCAGGCATTTGTCATGATTGAGGGGGAGTCTGGTTGA 2109 0.4125 MTKRFKKSDSNRRGKRRKSSGGFSPLDAPSSSVVFRLLCPATRIGGVIGKGGSIISQIRQETGVKVKIEEPVPGCDERVITFLCLDKENEEGSAEQGKEVNNNNNNNNNNNNNNNNNNNNNDDNNNNDDNNDDGESENKGKDDEGKDNGDDNEDKDSVSVEDSQSEKGSSNLSILKAVTLVFERMAQGVENNGEGGDENKKASYFSLRLLVLCNQVGCILGKGGSVIKRMAADSGAQIRILSKEEIPSCATDSDELVQITGGVEVVKKALQSVFQQILDNPSRDHESLSTNLTGPSSHSFGQFQQNKRTFAGQGASFATGANEIPVFHSAPMIPKFHEGPIRGRSRLPPEILTFRLLCPSENVGNIIGKGGSIIKTMQQETASEIKVIEGNPGSEDCVIVISGPAHPDDRISPVQEAIFRVQNRISRAFPDTKAQSMLSRIVVSSNHIGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVNGEIEAVHDALLQITMRLRNHFFREAFPSADFPSNSGFLDQQSSFPPYLGRRGLSPPRMYSDLGPPPLHAGFPLDDHPHFMNNIHRPGIPPHISERKPWGPKGLLEGGGRMGLPEFAGGPRRISGFAGGSLPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANVTITDPKPGAAETKIIISGTPEQTNAAQSLIQAFVMIEGESG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00311 702 CDD KH-I_PEPPER_rpt2_like 438 510 - -
Vivi3g00311 702 ProSiteProfiles Type-1 KH domain profile. 436 505 - -
Vivi3g00311 702 Gene3D K Homology domain, type 1 30 96 IPR036612 GO:0003723
Vivi3g00311 702 Gene3D K Homology domain, type 1 350 428 IPR036612 GO:0003723
Vivi3g00311 702 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 346 691 - -
Vivi3g00311 702 Gene3D K Homology domain, type 1 626 697 IPR036612 GO:0003723
Vivi3g00311 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 196 281 IPR036612 GO:0003723
Vivi3g00311 702 MobiDBLite consensus disorder prediction 91 170 - -
Vivi3g00311 702 CDD KH-I_PEPPER_rpt1_like 352 419 - -
Vivi3g00311 702 ProSiteProfiles Type-1 KH domain profile. 204 273 - -
Vivi3g00311 702 SMART kh_6 626 696 IPR004087 GO:0003676
Vivi3g00311 702 SMART kh_6 203 278 IPR004087 GO:0003676
Vivi3g00311 702 SMART kh_6 350 426 IPR004087 GO:0003676
Vivi3g00311 702 SMART kh_6 31 186 IPR004087 GO:0003676
Vivi3g00311 702 SMART kh_6 435 510 IPR004087 GO:0003676
Vivi3g00311 702 MobiDBLite consensus disorder prediction 1 19 - -
Vivi3g00311 702 Gene3D K Homology domain, type 1 202 282 IPR036612 GO:0003723
Vivi3g00311 702 Gene3D K Homology domain, type 1 434 512 IPR036612 GO:0003723
Vivi3g00311 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 628 695 IPR036612 GO:0003723
Vivi3g00311 702 MobiDBLite consensus disorder prediction 96 125 - -
Vivi3g00311 702 CDD KH-I_PEPPER_rpt2_like 206 273 - -
Vivi3g00311 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 26 84 IPR036612 GO:0003723
Vivi3g00311 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 352 427 IPR036612 GO:0003723
Vivi3g00311 702 MobiDBLite consensus disorder prediction 132 162 - -
Vivi3g00311 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 434 516 IPR036612 GO:0003723
Vivi3g00311 702 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g00311 702 CDD KH-I_PEPPER_rpt1_like 33 91 - -
Vivi3g00311 702 ProSiteProfiles Type-1 KH domain profile. 32 81 - -
Vivi3g00311 702 Pfam KH domain 208 271 IPR004088 GO:0003723
Vivi3g00311 702 Pfam KH domain 35 81 IPR004088 GO:0003723
Vivi3g00311 702 Pfam KH domain 629 692 IPR004088 GO:0003723
Vivi3g00311 702 Pfam KH domain 353 405 IPR004088 GO:0003723
Vivi3g00311 702 Pfam KH domain 440 505 IPR004088 GO:0003723
Vivi3g00311 702 ProSiteProfiles Type-1 KH domain profile. 627 691 - -
Vivi3g00311 702 ProSiteProfiles Type-1 KH domain profile. 351 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00311 Vivi-Chr3 5297402 5301929 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00311 K21444 - gmx:100777433 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00311 3 5297402 5301929 Vivi3g00311 3 5297402 5301929 ECH