Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00282 ATGGCGGTTTCCGGCAGTCCCAACGGCAGTTCCACACCTCCACCGCCGCCGCCACAACAAGAACGAGCTAACAAGCTTGGATTCACCAAACCTATCTCGCTTGCCGGTCCCACCACAGCTGATCTCCATCGTAACACCGAGTTAGAGAAGTTTTTGGTTGATTCGGGTCTTTATGAGAGCAATGAAGAATCTGCAAGCAGACAAGAGGTTCTTCGCCGCCTAGATCAGATTGTGAAAAGCTGGGTGAAGCTGTTGACCCGCCAACGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCGGTCATCTTCACTTTTGGCTCTTACAGATTAGGGGTTCATGGACCTGGAGTGGACATAGACACTTTGTGCATTGGTCCTTCCTATGTAAATCGAGAGGAGGACTTCTTCATCATTTTGCATAACATCCTGGCTGAAATGGACGAAGTTACTGAACTTCAACCGGTTCCTGATGCACATGTCCCAGTTATGAAATTCAAGTTCCAGGGAATTTCTATAGATTTGCTGTATGCGAGCATATCTATTTTGGTTGTGCCAGAAGACCTGGATATCTCAGACGGTTCCGTTCTGCATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGCTGCAGAGTGGCGGATCAGATTCTTAAACTTGTTCCGAATGTCGAGCACTTCCGAACTACGCTGAGATGTTTGAAGTTTTGGGCTAAAAGACGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGAGGTGTAAATTGGGCTATTTTAGTTGCTAGAGTTTGCCAGTTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTAGATTCTTCAGGGTGTATTCACAGTGGCGGTGGCCAAACCCTGTAATGCTGTGCTCTATAGAAGAAAATGAACCACATCTCCCTATATGGGATCCTCGCAGAAATCATAGGGACAGGTTTCACCTTATGCCAATAATTACTCCGGCATACCCTTGCATGAATTCCAGCTACAATGTCTCGACAAGCACTCTCCGTGTTATGATGGAACAGTTCCAATATGGCAACAAGATTTGTGACGAAATTGAGCTTAACAAATCTCAGTGGAATGCACTTTTTAAGCCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTAGACATAGTTGCATTAGATGCTGATGATTTACTTTTGTGGAGGGGTTGGGTAGAATCCCGACTGAGACAGCTAACCTTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGTCATCCTTATCCACACGAGTATGCAGACACGTCCAAGCCTTGTCCACATTCTGCATTTTTCATGGGGTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAAGGTCAGCAATTTGATATACGTGGAACGGTTGATGAATTCAGACAAGATATTATCATGTATGTATACTGGAAGCCGGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGTACTCGAATGCCGAGGCATATGAGCCATGCAGCTGACAAAATGGGACAATATACCACAAAGTGCTACTCTGGTTCTAGCTCTTCTGAAAGGTGTATCAAGAGGAAGAATAGCCATGAAATGGGGGATGTGAAACCCGATAAACCTGAGAAGCGGGCATCTGTTAGCCCACGGAGGCTAGAGTGTGTTTCACCTGAAAGTTGTACTAGTAAATTAGATGGTACACCTCAAATGAGTATTGAGTGTATTGATGGGGTTAGGCCAGACGGATCAACAACGAAGGATGCCGACAGCAATTGTGAAATCAAGTCATCCGATGGACTCTTAGGAAATGATACAATTATTGAAGTAGGTGACATGCAGATAGATGAAACATGTTTTGTTGATTCCACACATGATAGGCTGAAATCAAGGGATTTAGTAGTGCAGAATGAGAATGGAGTCAATGGGGACAAAGCTCTGGACCTGGCTTTTGTTTGCTTGGAAAGGGCAGAAACTACATCTTCAAAAAGCCTGACAAACTGGGAAGAAAATGCTGTTAAAATGGATCAACAACTAGACAGAGCTTGTAATTTCACAAGGGCTGAATGTTCAGATTATGCACCAAATGCCAGCACCCAGAACCTCAATTGCGAGACAGATGTCAGACTCAGGAGTGTATAA 2175 0.4382 MAVSGSPNGSSTPPPPPPQQERANKLGFTKPISLAGPTTADLHRNTELEKFLVDSGLYESNEESASRQEVLRRLDQIVKSWVKLLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMDEVTELQPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSVLHDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQFYPNAIPSMLVSRFFRVYSQWRWPNPVMLCSIEENEPHLPIWDPRRNHRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICDEIELNKSQWNALFKPYVFFEAYKNYLQVDIVALDADDLLLWRGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSKPCPHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQDIIMYVYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHMSHAADKMGQYTTKCYSGSSSSERCIKRKNSHEMGDVKPDKPEKRASVSPRRLECVSPESCTSKLDGTPQMSIECIDGVRPDGSTTKDADSNCEIKSSDGLLGNDTIIEVGDMQIDETCFVDSTHDRLKSRDLVVQNENGVNGDKALDLAFVCLERAETTSSKSLTNWEENAVKMDQQLDRACNFTRAECSDYAPNASTQNLNCETDVRLRSV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00282 724 FunFam Poly(A) polymerase alpha, putative 59 215 - -
Vivi3g00282 724 Pfam Nucleotidyltransferase domain 100 176 IPR002934 GO:0016779
Vivi3g00282 724 SUPERFAMILY Nucleotidyltransferase 24 220 IPR043519 -
Vivi3g00282 724 Pfam Poly(A) polymerase central domain 27 370 IPR007012 GO:0043631|GO:1990817
Vivi3g00282 724 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 374 499 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vivi3g00282 724 Gene3D - 27 369 - -
Vivi3g00282 724 MobiDBLite consensus disorder prediction 539 562 - -
Vivi3g00282 724 FunFam Putative poly(A) polymerase gamma 196 369 - -
Vivi3g00282 724 MobiDBLite consensus disorder prediction 539 561 - -
Vivi3g00282 724 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 371 - -
Vivi3g00282 724 MobiDBLite consensus disorder prediction 1 38 - -
Vivi3g00282 724 Gene3D Poly(A) polymerase predicted RNA binding domain 373 489 - -
Vivi3g00282 724 Gene3D Beta Polymerase, domain 2 59 215 IPR043519 -
Vivi3g00282 724 FunFam Nuclear poly(A) polymerase 4 373 489 - -
Vivi3g00282 724 Pfam Poly(A) polymerase predicted RNA binding domain 374 432 IPR007010 GO:0003723|GO:0043631
Vivi3g00282 724 PANTHER POLY A POLYMERASE 12 548 - -
Vivi3g00282 724 CDD NT_PAP_TUTase 67 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00282 Vivi-Chr3 4723754 4730025 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00282 K14376 - gmx:100802620 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00282 3 4723754 4730025 Vivi3g00282 3 4723754 4730025 ECH