Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00268 ATGCTTCATTCCTTCACTGTACGGTCATGTGCAGCTTCAACGCTCCTTCGTTCTCGCCTCAGACCCACCATTCGATGCTGCACCACTCTATCATCTACCTCTACAGACACTCCAACACCTACCTCAACCCCTATCAAGAAACGAGTTGCCTCGGGAGTTCAACCTACCGGCTCAATTCACCTTGGAAATTATTTCGGCGCCATCAAGAATTGGGTTGCTCTTCAGGATGAGTATGATACTCTTTACTTCATTGTGGATCTGCATGCGATTACATTGCCGCACGACAGACAACAATTATCTAAGGATACAAAGTCAACTGCAGCCATTTACCTGGCATCTGGGATAGATCCTTCAAAGGCTTCAGTTTTTGTCCAGTCTCATGTCCGAGCACACGTAGAATTGATGTGGCTGTTAAGTTCCATTACACCAATCGGCTGGCTGAACAGAATGATACAGTTTAAAGAGAAGTCTCGCAAGGCGGGAGATGATGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGACTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTCACTTAGCTGAGCGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGGCGAGGTGGTGCTTTATTTAAGGTTCCAGAGCCCCTTATACCTCCAACTGGAGCCCGAATTATGTCCCTAACTGATGGCCTGGCAAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATTCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAAATCGACAATCCTGAGAGACCTGAATGTAATAATCTTCTTTCCATATATCAGCTCATTTCTGGAAAGACAAAAGAGGAAATTGTGCAGGAATGCCAAGACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCAACCCATTCAGGCTCGGTATGAAGAACTCATGTCAGATTCAGGTTATTTGGATGAAGTATTAAGAGAAGGTGCTAGAAATGCAGAAGATATAGCGAATGCTACACTTCATAATGTTTACCAAGCAATGGGATTTTCGAGGAGACAGTGA 1167 0.4302 MLHSFTVRSCAASTLLRSRLRPTIRCCTTLSSTSTDTPTPTSTPIKKRVASGVQPTGSIHLGNYFGAIKNWVALQDEYDTLYFIVDLHAITLPHDRQQLSKDTKSTAAIYLASGIDPSKASVFVQSHVRAHVELMWLLSSITPIGWLNRMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQTDFVPVGEDQKQHLELTRHLAERVNNLYGGRKWKKLGGRGGALFKVPEPLIPPTGARIMSLTDGLAKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPSLEIDNPERPECNNLLSIYQLISGKTKEEIVQECQDMNWGTFKPLLTDALIDHLQPIQARYEELMSDSGYLDEVLREGARNAEDIANATLHNVYQAMGFSRRQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00268 388 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 23 384 - -
Vivi3g00268 388 Pfam tRNA synthetases class I (W and Y) 48 340 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi3g00268 388 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 55 64 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi3g00268 388 Gene3D - 244 354 - -
Vivi3g00268 388 FunFam Tryptophan--tRNA ligase 242 352 - -
Vivi3g00268 388 NCBIfam tryptophan--tRNA ligase 46 384 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00268 388 Hamap Tryptophan--tRNA ligase [trpS]. 46 385 IPR024109 GO:0004830
Vivi3g00268 388 PRINTS Tryptophanyl-tRNA synthetase signature 251 261 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00268 388 PRINTS Tryptophanyl-tRNA synthetase signature 186 207 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00268 388 PRINTS Tryptophanyl-tRNA synthetase signature 109 128 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00268 388 PRINTS Tryptophanyl-tRNA synthetase signature 59 75 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00268 388 SUPERFAMILY Nucleotidylyl transferase 48 384 - -
Vivi3g00268 388 Gene3D HUPs 49 383 IPR014729 -
Vivi3g00268 388 CDD TrpRS_core 48 336 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00268 Vivi-Chr3 4636048 4647792 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00268 K01867 - gmx:100780314 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00268 3 4636048 4647792 Vivi3g00268 3 4636048 4647792 ECH