Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00267 ATGGGTGTTCTTTCTCAGTACGCAGTTCCGTCATGCTTCATTCCTTCACTGTCATGTGCAGCTTCAACGCTCCTTCGTTCTCGCCTCAGACCCACCATTCGATGCTGCACCACTCTATCATCTACCTCTACAGACACTCCAACACCTACCTCAACCCCTATCAAGAAACGAGTTGCCTCGGGAGTTCAACCTACCGGCTCAATTCACCTTGGAAATTATTTCGGCGCCATCAAGAATTGGGTTGCTCTTCAGGATGAGTATGATACTCTTTACTTCATTGTGGATCTGCATGCGATTACATTGCCGCACGACAGACAACAATTATCTAAGGATACAAAGTCAACTGCAGCCATTTACCTGGCATCTGGGATAGATCCTTCAAAGGCTTCAGTTTTTGTCCAGTCTCATGTCCGAGCACACGTAGAATTGATGTGGCTGTTAAGTTCCATTACACCAATCGGCTGGCTGAACAGAATGATACAGTTTAAAGAGAAGTCTCGCAAGGCGGGAGATGATGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGACTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTCACTTAGCTGAGCGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGGCGAGGTGGTGCTTTATTTAAGGTTCCAGAGCCCCTTATACCTCCAACTGGAGCCCGAATTATGTCCCTAACTGATGGCCTGGCAAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATTCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAAATCGACAATCCTGAGAGACCTGAATGTAATAATCTTCTTTCCATATATCAGCTCATTTCTGGAAAGACAAAAGAGGAAATTGTGCAGGAATGCCAAGACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCAACCCATTCAGGCTCGGTATGAAGAACTCATGTCAGATTCAGGTTATTTGGATGAAGTATTAAGAGAAGGTGCTAGAAATGCAGAAGATATAGCGAATGCTACACTTCATAATGTTTACCAAGCAATGGGATTTTCGAGGAGACAGTGA 1194 0.4313 MGVLSQYAVPSCFIPSLSCAASTLLRSRLRPTIRCCTTLSSTSTDTPTPTSTPIKKRVASGVQPTGSIHLGNYFGAIKNWVALQDEYDTLYFIVDLHAITLPHDRQQLSKDTKSTAAIYLASGIDPSKASVFVQSHVRAHVELMWLLSSITPIGWLNRMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQTDFVPVGEDQKQHLELTRHLAERVNNLYGGRKWKKLGGRGGALFKVPEPLIPPTGARIMSLTDGLAKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPSLEIDNPERPECNNLLSIYQLISGKTKEEIVQECQDMNWGTFKPLLTDALIDHLQPIQARYEELMSDSGYLDEVLREGARNAEDIANATLHNVYQAMGFSRRQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00267 397 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 33 393 - -
Vivi3g00267 397 FunFam Tryptophan--tRNA ligase 251 361 - -
Vivi3g00267 397 NCBIfam tryptophan--tRNA ligase 55 393 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 CDD TrpRS_core 57 345 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 PRINTS Tryptophanyl-tRNA synthetase signature 195 216 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 PRINTS Tryptophanyl-tRNA synthetase signature 260 270 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 PRINTS Tryptophanyl-tRNA synthetase signature 68 84 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 PRINTS Tryptophanyl-tRNA synthetase signature 118 137 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vivi3g00267 397 SUPERFAMILY Nucleotidylyl transferase 57 393 - -
Vivi3g00267 397 Pfam tRNA synthetases class I (W and Y) 57 349 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi3g00267 397 Hamap Tryptophan--tRNA ligase [trpS]. 55 394 IPR024109 GO:0004830
Vivi3g00267 397 Gene3D - 253 363 - -
Vivi3g00267 397 Gene3D HUPs 58 392 IPR014729 -
Vivi3g00267 397 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 64 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00267 Vivi-Chr3 4636037 4647792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00267 K01867 - gmx:100780314 637.876