Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00199 ATGGAGTCTGTCGCCTCCAGTTCCAATTCAACACCAAATGACACCAACAACAATAACCGCCGCCATTCTCGTTTCAAACACAGTCAACCAATCTCAGACAGAATAGTAAGAGCTCTCCGCCACCGTCTCCGTCTCCTCCACCGTGCTGGTTCCACCTTCTTCATATTCGGCGCAACCGGTAACGTCTACACAGTAACATTATCCTCTACACCCACATGCACGTGCCCCGACCGAACAACCCCATGCAAACACATCATCTTCGTTCTCATTCGAGTACTCGGCGTTTCGCAGAACGACGCGTGTGTCCGACGAAGAAACCTACGTCCATGTCATCTTCAAAGACTCCTAAACATGCCAACGTTACCGGAAGCGGTTGCGGGGTTTCCGCTACGACAGAGATTTCATCAGGTGTTCTTCGAAGGAGGGTCTAAGAAGGGGAAGAGTAATGTAGAGATGGAAGAGGGTTCGACGTGTCCGGTTTGTCTTGAAGAGATGGGGAAGGAAGAGAAGTTGGTGGCTTGTGGAACGTGTAGGAATGTTATCCATGAAGAGTGTTTGGTTAGGTGGAAGAGAAGTAGAGGAAGAAGATCAGCGAGTTGTGTGATTTGTAGGGCAAGGTGGAGGGATAGAGTGGAAGAAGATAAGTATGTTAATCTTTCTGCTTATGTTAGTGAGGATGATTTTAGGGCACAATCATCTGGGGGGATTTGTACTGACTAG 720 0.4833 MESVASSSNSTPNDTNNNNRRHSRFKHSQPISDRIVRALRHRLRLLHRAGSTFFIFGATGNVYTVTLSSTPTCTCPDRTTPCKHIIFVLIRVLGVSQNDACVRRRNLRPCHLQRLLNMPTLPEAVAGFPLRQRFHQVFFEGGSKKGKSNVEMEEGSTCPVCLEEMGKEEKLVACGTCRNVIHEECLVRWKRSRGRRSASCVICRARWRDRVEEDKYVNLSAYVSEDDFRAQSSGGICTD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00199 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 221 IPR013083 -
Vivi3g00199 239 Pfam SWIM zinc finger 63 91 IPR007527 GO:0008270
Vivi3g00199 239 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g00199 239 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 14 215 IPR039903 GO:0061630
Vivi3g00199 239 MobiDBLite consensus disorder prediction 1 18 - -
Vivi3g00199 239 ProSiteProfiles Zinc finger RING-type profile. 158 204 IPR001841 -
Vivi3g00199 239 SUPERFAMILY RING/U-box 149 210 - -
Vivi3g00199 239 ProSiteProfiles Zinc finger SWIM-type profile. 63 93 IPR007527 GO:0008270
Vivi3g00199 239 Pfam Ring finger domain 157 204 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00199 - - var:108321788 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00199 3 3830624 3831694 Vivi3g00199 3 3830624 3831694 ECH