Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00198 ATGGAAGCCACCGAAACCTCTCGAAACTCCCACAATCCGTCGCGCAAGGTTGTTGACATAGCTGCCGGTGAATCACACACTCTCCTTCTTTCCGGAGATGGCAGTGTTTACTCTTGGGGTAGAGGAATGTTTGGACGGCTTGGACTTGGTTCTCAAAATGATGAACTTTTTCCGGTGAAAATAAAGTTTGAAAACCCTAGTGGAAGTAGTGATTGTGTCAAAATAGTGGGAATTGCTGCTGGTGCTTATCATAGTCTTGCTCTTGCAGAAGATGGATCTGTTTGGTGCTGGGGTTACAACATCTATGGTCAACTTGGTATCAGTGGTGAGGACTCGCATGATTCCCAGGTTCCTTGCTTACTTAGTAGATTTCTTGAGTTGCAACCGCCTGATTCTTCAACAGGTCTATCTGAAGCCGAAGACAGAGCATCATTAAAGATGTGTACTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCGCGGGACCCTGTGGATATGGGGAAACATCCCAGAAGAAAACAAAGATGGTGGGTTATCTCTTGTAAGCCGTTTCATTCCAAGACCAGTCTGGGATTTTCATGGTCGAGCTGTTGTCAAGGTTTCATGTGGAAACGAGCATGTTGTAGCACTGGTTAGTGCTACTACAGAATCAAACAAGGATGAAGAACTACTGTGCTACTCTTGGGGTTATAACAGCCACGGCCAATTAGGTTTGGGGGATACGCAGAGCAGGCTGCGTCCCGAAGTTATAAAAATATTCGACGAGGATTCTCCTTCGACAATTTACGAGGTAGCATGTGGTGCCTTTCACACGGCTTTGCTAACTCACAAAAAGGAACGTGGCAACGCATTAGAAAGCATGTGTTGGACCTTTGGCCTTGGCGAAAACGGTCAACTTGGGCATGGAACAACGCAAAGCGCTTTATTTCCTACACCCGTTAAAGTGTTGCCGCAAAATGCATACTTTATTTCTGTCGACTGTGGCTTGTTTCATACAAGTGTTGTCTCCTCAACTGGGGGTGTGTGGTCTTGGGGAATGGAGAAGGGTCTTGGCTTATGTCCTGATGCCAGTCGCGGTCAAACAGTTTCTGGTGATGCCCTCTCCCCCCTTCTCATCTCATGCGAGCCACATCAACCTATTTTTCCAGATCCAGTTAAAGTCGTGTGTGGAGCTGCACACACTGTTTTTGTTGTGCAGAAGGGCCATAAGGTGTGGTCTTGGGGTAGGGGAAGGAGTGGTGTTCTTGGAAATGGTAAGGAAATCGATAGTTACACTCCCACTATTGTTTTGTGGCCTCCAACGACAGAGGATCTCAATGACAAGGATTCGAAGAGCTCGGATGAGCAAGATAAGGCCGCAGAAAAGAAACCCGAAGTAATAACAGAGAGAGATGAGAAACTATCCTCAGCATTGAATGAGGTGAAGCTGCTTCAAACAAAGCTATCTACAATGGAAAAATATGCTAGTATACTTCATGGCTCTATTTTTGGAAAACCTTTTGATGAAAACGATATTCCCACTTCGATGCGGGATTCGGGTTCAATGAATATTGCAAAAGAATGGGATGACATGTTAGAGGCAGCAGATGATAGGAAGCTAGCTAGGATGGAAATGTTTTACCGTGACATGCTAGCCGACGTGAAAGATAAGTTAATGAAGAGAAAGATCAAAGAAATTATAAAGGAGTGTCTCCAATCTTCAAAGGTAAGTAATAATTAG 1728 0.4485 MEATETSRNSHNPSRKVVDIAAGESHTLLLSGDGSVYSWGRGMFGRLGLGSQNDELFPVKIKFENPSGSSDCVKIVGIAAGAYHSLALAEDGSVWCWGYNIYGQLGISGEDSHDSQVPCLLSRFLELQPPDSSTGLSEAEDRASLKMCTVKAGGMMSLAIDNRGTLWIWGNIPEENKDGGLSLVSRFIPRPVWDFHGRAVVKVSCGNEHVVALVSATTESNKDEELLCYSWGYNSHGQLGLGDTQSRLRPEVIKIFDEDSPSTIYEVACGAFHTALLTHKKERGNALESMCWTFGLGENGQLGHGTTQSALFPTPVKVLPQNAYFISVDCGLFHTSVVSSTGGVWSWGMEKGLGLCPDASRGQTVSGDALSPLLISCEPHQPIFPDPVKVVCGAAHTVFVVQKGHKVWSWGRGRSGVLGNGKEIDSYTPTIVLWPPTTEDLNDKDSKSSDEQDKAAEKKPEVITERDEKLSSALNEVKLLQTKLSTMEKYASILHGSIFGKPFDENDIPTSMRDSGSMNIAKEWDDMLEAADDRKLARMEMFYRDMLADVKDKLMKRKIKEIIKECLQSSKVSNN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00198 575 MobiDBLite consensus disorder prediction 440 464 - -
Vivi3g00198 575 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 267 277 IPR000408 -
Vivi3g00198 575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Vivi3g00198 575 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 20 30 IPR000408 -
Vivi3g00198 575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 216 IPR000408 -
Vivi3g00198 575 SUPERFAMILY RCC1/BLIP-II 13 320 IPR009091 -
Vivi3g00198 575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 341 IPR000408 -
Vivi3g00198 575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 163 IPR000408 -
Vivi3g00198 575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 280 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 400 421 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 75 88 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 94 110 IPR000408 -
Vivi3g00198 575 PRINTS Chromosome condensation regulator RCC1 signature 331 349 IPR000408 -
Vivi3g00198 575 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Vivi3g00198 575 MobiDBLite consensus disorder prediction 435 464 - -
Vivi3g00198 575 Gene3D - 225 466 IPR009091 -
Vivi3g00198 575 Gene3D - 3 224 IPR009091 -
Vivi3g00198 575 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 145 448 - -
Vivi3g00198 575 Pfam Regulator of chromosome condensation (RCC1) repeat 91 160 IPR000408 -
Vivi3g00198 575 Pfam Regulator of chromosome condensation (RCC1) repeat 342 400 IPR000408 -
Vivi3g00198 575 Pfam Regulator of chromosome condensation (RCC1) repeat 228 277 IPR000408 -
Vivi3g00198 575 Pfam Regulator of chromosome condensation (RCC1) repeat 292 337 IPR000408 -
Vivi3g00198 575 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00198 Vivi-Chr3 3824350 3827322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00198 - - gmx:100815199 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00198 3 3824350 3827322 Vivi3g00198 3 3824350 3827322 ECH
Vivi3g00198 3 3824350 3827322 Vivi3g02319 3 38983465 38984802 PCT