Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00193 ATGGCTTTCATAGTCTCACCAACTATAATGAGAAACTCCATTTCATTGCAAAATAGAGTTGTTTGTGATATGCCTGATAACTCTTATAAGGATAAGTTTTTATTTAGAAACAAGGGCATTTATAAGGGCACACGCAATCTTCAAGATCATTTGACCGTCGCAAATGTTGCGAGCCCGTCGCGTGTGATCGCTCCGCCTCCACCGCCGGAGAAACTTCCAGGGACCAACGGTGGCCAACACCATGTTGCATGGACTAGTGTCCCCCAAGAAAGATGGGAAGGAGAACTTCTTGTTCAAGGACATATTCCACTCTGGCTGAAAGGAACGTACATAAGGAATGGTCCAGGCATGTGGAACATAGGAGACTATAATTTCAGGCATCTCTTTGATGGCTATGCCACCTTGGTTGGACTTCACTTTGAGAATGGGCGGTTGACGGCCGGTCACCGGCAAATCGAATCTCAAGCTTATCAAGCAGCAAAGAAAAATCAGAAGATATGTTATCGTGAATTTTCTGAAGTGCCTAAGGCTGAAAATTTCTTAGCTTATGTAGGAGAGCTAGCGAGTCTTTTCTCTGGTTCATCACTTACCGATAATGCCAACACCGGTGTGGTGAAGCTCGGCGATGGGAGGGTGGTTTGTTTGACAGAGACACAAAAAGGGTCTATAGTGATAGATCCTGAGACGTTGGAGACAATTGGAAAATTTGAGTATAGTGATTCTTTGGGAGGACTCATTCATTCCGCACACCCTATTGTGACGGATAAGGAGTTTTTAACGTTGATCCCTGACCTTGTGAAACCAGGATACTTGGTAGTGAAGATGGAACCCGGCTCTAATGAGAGGAATGTTATTGGGCGGGTTGATTGTCGAGGCGGATCATCGCCCGGTTGGGTCCATTCCTTCCCTGTTACTGAACACTATGTTATTGTGCCTGAAATGCCATTGAGGTATTGTGCTCAGAATTTGCTCAGGGCTGAACCAACTCCTTTATACAAGTTTCAGTGGCATCCTGAATCCAAAGCTTTTATGCATGTAATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTCTATTTGTTACTTTCCATTTCATAAATGCATATGAAGAGGAAGATGAAGATGGGAGGGTGACTGCTGTTATTGCTGACTGCTGTGAACACAATTCAAACCCCGGCATTCTTGACAAGCTTAGATTACAGAACCTTCGCTCATTTAATGGCAACGATGTTCTACCAGATGCTAGGGTTGGAAGGTTTAGAATACCACTAGATGGAAGTCCATATGGAACATTAGAAGCAGCATTAGACCCAAATGAACATGGGAGAGGCATGGATATGTGCAGCATAAACCCTAATTATTTAGGGATGAAATACAGATATACCTATGCTTGTGGAGCACAACGCCCTTGTAACTTCCCCAACACCCTCACCAAGATTGATCTAGAATCAAAAAGGGCCAAGAATTGGTATGAAGAAGGAGCTGTGCCCTCGGAACCATTCTTTGTGCCTCGACCAGGAGCAACAGAAGAAGACGATGGTGTAGTAATCTCCATAGTCAGTGAGAAAAATGGAGAAGGATATGCATTGGTGTTAGATGGTTCCACTTTTGAAGAGATTGCTAGGGCTAAGTTCCCTTATGGTCTTCCATATGGATTGCATGGATGTTGGGTTCCAAAACAGTAA 1695 0.4407 MAFIVSPTIMRNSISLQNRVVCDMPDNSYKDKFLFRNKGIYKGTRNLQDHLTVANVASPSRVIAPPPPPEKLPGTNGGQHHVAWTSVPQERWEGELLVQGHIPLWLKGTYIRNGPGMWNIGDYNFRHLFDGYATLVGLHFENGRLTAGHRQIESQAYQAAKKNQKICYREFSEVPKAENFLAYVGELASLFSGSSLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPETLETIGKFEYSDSLGGLIHSAHPIVTDKEFLTLIPDLVKPGYLVVKMEPGSNERNVIGRVDCRGGSSPGWVHSFPVTEHYVIVPEMPLRYCAQNLLRAEPTPLYKFQWHPESKAFMHVMCKTSGKIVASVEVPLFVTFHFINAYEEEDEDGRVTAVIADCCEHNSNPGILDKLRLQNLRSFNGNDVLPDARVGRFRIPLDGSPYGTLEAALDPNEHGRGMDMCSINPNYLGMKYRYTYACGAQRPCNFPNTLTKIDLESKRAKNWYEEGAVPSEPFFVPRPGATEEDDGVVISIVSEKNGEGYALVLDGSTFEEIARAKFPYGLPYGLHGCWVPKQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00193 564 Pfam Retinal pigment epithelial membrane protein 89 562 IPR004294 GO:0016702
Vivi3g00193 564 PANTHER BETA-CAROTENE DIOXYGENASE 86 562 IPR004294 GO:0016702
Vivi3g00193 564 MobiDBLite consensus disorder prediction 59 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00193 Vivi-Chr3 3774920 3778205 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00193 K17913 - gmx:100814148 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00193 3 3774920 3778205 Vivi3g00193 3 3774920 3778205 ECH