Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00161 ATGGATTTTTATGGAAACCGAACACTCCTCACCTTAATGGACAAAGAAAAACCAGACCAACCAGAATCCCCCAACATCCACCTCCGTCTCCAAATCCAAACTCACAGAGAAACAAACGACCAAGATCTTCAGTTCAGCCCACCAAGACCTTCCATTTTTCCACAATCACCATGGACACTCTCTCACCTTCCATCACCTCCCCCTTCATTGCTCTACCATTGCATCGCATCCCTCCATCGCCACGAAGGAAACATCTACTCCATCGCAGCTTCGAAAGGATTCATCTTTACAGGATCCAACAGTAGTCGAATTCGTGTTTGGAAGCAGCCGGATTGCATGGACAAAGGCTATCTAAAATCAAACTCCGGCGAGGTTCGCGCCATTTTAGCTTATAACAACATGGTTTTCACCTCACACAAAGATCATAAAATCAGAATATGGAACTTCAGTGTCTCAGAGAATTTCAAATCCAAGAAAGTAGCTACTCTTCCGAAACGCAAAAACAACTCTTTTCTTAACTTCAACCGAACGAAAAACAACAACTCAAACAATTACAAACACAAAGAAACCATTTCTTGCATGGCGTATTACCATTCAGAAGGCTTGTTATACACCGGCTCTCATGACAGAACAGTAAAAGCTTGGAGAATCTCTGATGGAAAATGCATAGACTCATTTCTAGCACATGAAGATCATGTAAATGCTGTATTGGTGAACCAAGATGACGGTTGCGTTTTCACGTGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTATACACAGAAAACTCACACACATTAACAATGACACTAAAGTTCCAACCTTCACCAGTGAACACACTAGCATTGAGTTCATCCTTCAACCATTGTTTTCTCTACTCAGGAACATCAGATGGAATGATAAACTTCTGGGAGAAGGAGAGGCTATGTTATAGGTTCAACCATGGAGGGTTTCTGCAGGGTCATCGATTCGCGGTACTTTGCGTTGTGACAGTAGGGAACAACATGGTGTTTAGTGGCTCGGAGGATACGACGATACGAGTTTGGAGGAGGGAAGAAGGGAGCTGTTATCATGAGTGTTTGGCTGTTTTGGATGGACATAGAGGACCTGTGAGGTGTTTGGCTGCTTGTCTTGAGATGGAAAAGGTTGTTGTAGGGTTTTTGGTTTATAGTGGGAGTTTGGACCAGACGTTTAAGGTTTGGAGGATTAAGGTTTTTTGTGAGGATGAGAATGTGTGTTTGGATGTTGTTGGTGAAAAGTGTGAAGGGAGAGTGAAGAAGATTAGGGAATATGATATGAGTCCTGTTTTGTCACCTTCTTGGGTTGAGAAGAAACTTCAGGGTAGTAGTCCTTTTCAGTGA 1365 0.4271 MDFYGNRTLLTLMDKEKPDQPESPNIHLRLQIQTHRETNDQDLQFSPPRPSIFPQSPWTLSHLPSPPPSLLYHCIASLHRHEGNIYSIAASKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEVRAILAYNNMVFTSHKDHKIRIWNFSVSENFKSKKVATLPKRKNNSFLNFNRTKNNNSNNYKHKETISCMAYYHSEGLLYTGSHDRTVKAWRISDGKCIDSFLAHEDHVNAVLVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQPSPVNTLALSSSFNHCFLYSGTSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVVTVGNNMVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVVGFLVYSGSLDQTFKVWRIKVFCEDENVCLDVVGEKCEGRVKKIREYDMSPVLSPSWVEKKLQGSSPFQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00161 454 Gene3D - 177 314 IPR015943 GO:0005515
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 221 - -
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 360 IPR001680 GO:0005515
Vivi3g00161 454 Gene3D - 315 415 IPR015943 GO:0005515
Vivi3g00161 454 SMART WD40_4 111 148 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 358 403 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 219 258 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 178 216 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 265 306 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 313 351 IPR001680 GO:0005515
Vivi3g00161 454 SMART WD40_4 71 108 IPR001680 GO:0005515
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 257 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 187 215 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 270 305 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 319 350 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 360 402 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 220 257 IPR001680 GO:0005515
Vivi3g00161 454 Pfam WD domain, G-beta repeat 125 148 IPR001680 GO:0005515
Vivi3g00161 454 SUPERFAMILY WD40 repeat-like 73 405 IPR036322 GO:0005515
Vivi3g00161 454 Gene3D - 68 176 IPR015943 GO:0005515
Vivi3g00161 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 108 IPR001680 GO:0005515
Vivi3g00161 454 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 46 406 IPR045182 -
Vivi3g00161 454 CDD WD40 74 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00161 Vivi-Chr3 3085988 3087364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00161 187 422 Miscellaneous Gene Families AT5G08390 23.673 2.64e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00161 - - gsj:114414206 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00161 3 3085988 3087364 Vivi3g00161 3 3085988 3087364 ECH