Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00120 ATGCAGGCATCACGAGCAAGGCTTTTCAAGGAGTACAAAGAGGTGCAACGTGAGAAGACGGCTGATCCTGATATTCAACTGGTGTGTGATGATTCTAACATTTTTAAGTGGACAGCCCTTATCAAGGGACCTTCAGAGACTCCTTTCGAAGGGGGTATCTTCCAGCTTGCATTTTCTGTTCCAGAGCATTATCCTCTACAACCGCCTCAAGTCCGGTTTTTGACTAAAATATTTCATCCGAATGTGCATTTTAAGACAGGGGAGATTTGCCTAGATATCTTGAAAACTGCTTGGAGCCCTGCTTGGACTTTGCAGTCTGTCTGTAGGGCAATAATTGCTTTGATGGCTCATCCAGAACCTGACAGCCCGCTGAATTGTGACTCAGGTAATCTTCTGCGTTCAGGTGATGTTAGAGGGTACCAGTCCATGGCAAGAATGTACACAAGGCTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.4578 MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPFEGGIFQLAFSVPEHYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKTAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00120 157 CDD UBCc 7 148 IPR000608 -
Vivi3g00120 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Vivi3g00120 157 SMART ubc_7 6 153 - -
Vivi3g00120 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Vivi3g00120 157 FunFam protein PEROXIN-4 isoform X1 1 152 - -
Vivi3g00120 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Vivi3g00120 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Vivi3g00120 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Vivi3g00120 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00120 Vivi-Chr3 2053445 2056159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00120 7 123 Miscellaneous Gene Families AT3G17000 37.398 6.52e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00120 K10689 - aew:130766073 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00120 3 2053445 2056159 Vivi3g00120 3 2053445 2056159 ECH