Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00117 ATGGCGAACGACGAACTCCAATCTCTAGATTTAGGTTACGACCCCAACTTCGTCCCCGATTCCGTCAAAACCTTCGTCGTCCATCTCTACCGCCACATCCGAGAGAAGAATGTATACGAGATCCACCAGATGTACGAAAGCTCCTTCCAATCTCTATCGGAGCGTCTTTTCAAGGACACTCCATGGCCCTCCGTCGACGCCGTCGCTCAATACGTCGATAACGACCATGTGTTCTGTCTTCTGTACCGTGAGATGTGGTTTCGCCACCTGTATGCGCGTTTGACTCCTACGGTTCGTCAGAGGATCGATTCGTGGGATAATTACTGTAATCTGTTCCAGGTTGTGCTTCACGGGGTTGTGAATATGCAGTTGCCGAATCAGTGGCTTTGGGATATGGTTGATGAGTTTGTTTATCAGTTTCAGAGTTTTTGTCAGTATCGGGCTAAGATGAAGAATAAGAATGAACAGGAAATTGCTCTCTTGAGACAGTTCGATCAGGCTTGGAATGTTTTTGGTGTTCTGAACTTCTTGCAAGCTCTTGTTGAGAAGTCAACTATTATTCAGATACTAGAGCAAGAGAAGCTAGGGCTTGAGCAATTCACTGCTAATGATGGTTATGATTACAATGGGGGTAGCAATGTCTTGAAGGTTTTGGGGTATTTTGGTATGGTTGGTTTGCTGAGGGTTCATTGTCTTTTGGGTGATTATCATACTGGTCTCAAGTGCTTGCAACCTATTGATATCAGTCAGCCAGGTCTTTACACCATTGTTATTGGATGCCACATTACCACCATTTATCACTATGGTTTTGCCAACCTTATGCTTCGCAGGTATGTGGAAGCAATTAGAGAATTCAACAAAATTCTCTTGTACATCTTTAAGACAAAGGTGTATCATCAGAAATCTCCTCAATACGAACAGATTTTGAAGAAGAATGAACAAATGTATGCCTTGTTGGCGATATCCCTCTCACTCTGCCCACAGAGCAGGCTCGTTGATGAAACTGTGAACTCGCAGTTGCGAGAGAAGTATGGTGAAAAGATGATTAGAATGCAACGTTATGATGACGAAGCTTTTGCTATGTATGATGAGCTCTTCTCATATGCATGCCCCAAGTTTATCACCCCTTCAGCGCCCAATTTTGATGAACCTTTAGTAAATTACAACCAGGATGCCTATAGACTTCAATTGAAACTATTCCTTTATGAAGCAAAGCAGCAACAATTGTTATCAGGTCTCCGGACATTCTTGAAAGTATATTCAACTATCTCCCTTGCAAAACTTGCAAGTTACATGGAAGTAGATGAACCAACCTTAAGGACTATATTGATGACATATAAGCACAAGACTCATGCTGTTGATACTGCTGGAAAAGTTATATCCAATGCTGACGTGGATTTCTATATTGATGATGACACAGTTCATGTTGTGGAGTCTAAACCTGCCAAACGATATGGGGATTACTTCCTGCGTCAGGTGGTTAAGCTTGAAGGAGTGATCAATGAGATGGACAGTATAAAGCTGGAGTGA 1530 0.4248 MANDELQSLDLGYDPNFVPDSVKTFVVHLYRHIREKNVYEIHQMYESSFQSLSERLFKDTPWPSVDAVAQYVDNDHVFCLLYREMWFRHLYARLTPTVRQRIDSWDNYCNLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKNEQEIALLRQFDQAWNVFGVLNFLQALVEKSTIIQILEQEKLGLEQFTANDGYDYNGGSNVLKVLGYFGMVGLLRVHCLLGDYHTGLKCLQPIDISQPGLYTIVIGCHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKVYHQKSPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMIRMQRYDDEAFAMYDELFSYACPKFITPSAPNFDEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYSTISLAKLASYMEVDEPTLRTILMTYKHKTHAVDTAGKVISNADVDFYIDDDTVHVVESKPAKRYGDYFLRQVVKLEGVINEMDSIKLE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00117 509 ProSiteProfiles PCI domain profile. 281 483 IPR000717 -
Vivi3g00117 509 Pfam RNA polymerase I-associated factor PAF67 100 495 IPR019382 GO:0003743|GO:0005737|GO:0005852
Vivi3g00117 509 Hamap Eukaryotic translation initiation factor 3 subunit L [EIF3L]. 2 498 IPR019382 GO:0003743|GO:0005737|GO:0005852
Vivi3g00117 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 16 507 IPR019382 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00117 Vivi-Chr3 2009372 2014300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00117 K15029 - gmx:100804691 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00117 3 2009372 2014300 Vivi3g00117 3 2009372 2014300 ECH