Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00116 ATGCGCCCACCGGTTATTCTCGAACCTTCCACCACCTTTTCTCCTTCTTATTCTTCTCCCACCGATCGCAGGCTAAACACTCTCGCCAGACACCTTTCTGATTTTCCAGATCAAAATCAAATGGCTTCTAACATTTCTCCTTCTCCAACCGCTTCTTCTGATTCCGTTTTCGCTCACATCGTTCAAGCTCCCGAAGATCCTATCCTCGGGGTAACTGTTGCTTACAACAAAGATCAAAGTCCTATTAAGCTCAATTTGGGGGTTGGTGCTTACCGAACTGAGGAAGGTAAACCCCTTGTGTTGGATGTAGTGAGGCGAGTTGAACACCAACTGTTGAACGACTTGTCACGCAATAAGGAGTATATTCCAATTGTTGGGCTAGCTGATTTTAACAAATTGAGTGCCAAGCTTATTTTTGGTGCAGACAGCCCTGCTATTCAAGCGAACAGGGTTAGCACTGTTCAAGGCTTATCCGGTACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAGCACTATCACCAACGGATTATATACTTGCCACTACCTACTTGGGGAAATCATACAAAGATTTTTTCCTTGGCAGGTTTAACTGTCAAAACATATCGCTACTATGCTCCAGCAACACGGGGGCTTGACTTCCAAGGACTTCTAGAGGATCTTGGTTCTGCCCCATCTGGATCTGTTGTTTTGCTACATGCATGCGCACACAACCCCACGGGTGTTGATCCAACACTTGAACAGTGGGAGCAGATTAGACAGCTCATAAGATCAAAATCTCTATTGCCTTTCTTTGACAGTGCTTATCAGGGTTTTGCCAGTGGAAGTCTAGATGCAGATGCACAGCCTATTCGTTTGTTTGTTGCTGATGGTGGTGAATTGCTGGCAGCCCAGAGTTATGCAAAGAACATGGGTCTTTATGGTGAACGTGTTGGTGCCTTGAATATTGTCAGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCACGGTGCATCCATCGTGGCTGCCATTCTCAAGGACCGGGATTTGTACAATGACTGGACTATTGAATTGAAGGCAATGGCTGATCGCATTATCAGTATGCGCCAACAACTTTTCGATGCTTTACGTGCTAGAGGTACACCAGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAATCCTGAGCAAGTTTCCTTCATGACTAAAGAGTATCATATCTACATGACTTCTGATGGGAGGATTAGCATGGCTGGTTTGAGCTCCAGAACAGTCCCACATCTGGCGGATGCAATCCATGCAGCTGTTACCCGAGTTGCCTAA 1374 0.4556 MRPPVILEPSTTFSPSYSSPTDRRLNTLARHLSDFPDQNQMASNISPSPTASSDSVFAHIVQAPEDPILGVTVAYNKDQSPIKLNLGVGAYRTEEGKPLVLDVVRRVEHQLLNDLSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQANRVSTVQGLSGTGSLRVGGEFLAKHYHQRIIYLPLPTWGNHTKIFSLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLDADAQPIRLFVADGGELLAAQSYAKNMGLYGERVGALNIVSKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDRDLYNDWTIELKAMADRIISMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNPEQVSFMTKEYHIYMTSDGRISMAGLSSRTVPHLADAIHAAVTRVA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00116 457 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g00116 457 Pfam Aminotransferase class I and II 82 449 IPR004839 GO:0009058|GO:0030170
Vivi3g00116 457 CDD AAT_like 84 437 - -
Vivi3g00116 457 PANTHER ASPARTATE AMINOTRANSFERASE 51 455 IPR000796 GO:0006520|GO:0008483
Vivi3g00116 457 Gene3D - 116 357 IPR015421 GO:0003824
Vivi3g00116 457 FunFam Aspartate aminotransferase 116 357 - -
Vivi3g00116 457 PRINTS Aspartate aminotransferase signature 262 274 IPR000796 GO:0006520|GO:0008483
Vivi3g00116 457 PRINTS Aspartate aminotransferase signature 330 355 IPR000796 GO:0006520|GO:0008483
Vivi3g00116 457 PRINTS Aspartate aminotransferase signature 398 416 IPR000796 GO:0006520|GO:0008483
Vivi3g00116 457 PRINTS Aspartate aminotransferase signature 231 250 IPR000796 GO:0006520|GO:0008483
Vivi3g00116 457 FunFam Aspartate aminotransferase 346 449 - -
Vivi3g00116 457 SUPERFAMILY PLP-dependent transferases 55 455 IPR015424 -
Vivi3g00116 457 Gene3D Aspartate Aminotransferase, domain 1 60 449 IPR015422 GO:0003824
Vivi3g00116 457 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 300 313 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00116 Vivi-Chr3 1994318 1998518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00116 K14454 - gmx:547509 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00116 3 1994318 1998518 Vivi3g00116 3 1994318 1998518 ECH