Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00057 ATGAATTATCATATCACCATGCTTATATCATTGGATTTTGGTTTCCTTAGGTTACCCAACCCAAACCTCTTGCACACTAAAACTCCCATGTCTTTCCTTCATCTCCCAAGGTTATCCTCTCCCTCATTTTCTCGTCTATCCTCACGCACCTTCACCACTCTTCTCCACCCACCACCAAAATCCACTCTCACAAACACAAATCCAGAATCAAACCAACTCTCCACAATAACCCCAAAACCCGAAACCCTATCACTCGAAAAACTCTTCATTCCTCCAAACACCCATCTCACTCACGAAGACGCAAGAATCTTAAACGGTTCAAATATACTACTCAGCAATTACGCCACCGGTGCGAAAATTGTGCAAGCCGATTTTGTTAAAAGCAGCCCTGGAACTGGAGATTGTCCGTCTGATGGTCTTCCTGAGTTCGCGCTTGTTGGGAGGTCCAATGTCGGGAAGTCGTCGCTGCTTAATTCGATTGTGCGACGCAAGAATCTTGCTTTAACTTCGAAGAAACCTGGGAAGACGCAATTGATTAACCATTTTCGTGTGAATGATAATTGGTACTTGGTTGATTTGCCTGGTTATGGGTATGCATCTGCGCCTCATGAACTTAGAATGGATTGGGCAAAATTCACCAAAGACTTTTTACTGAACAGGTCAACATTAGTTTCAGTTTTCCTTCTAATAGATGCTAGCATCCCTGCTAAAAAAATTGATCTCGAGTATGCTAGATGGTTGGGTGAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAAAGGAAGAAGGCAAAGAATGGAGGCAAAAAACCTGAAGAGAATGTCAATGACTTTCAGGAGTTGATTCGGAGCTCCTTTGAAACCGTGCCTCCATGGATCATGACCAGCAGTGTAACTCATCAGGGTCGTGATGAGATTCTCCTTCATATGGCCCAACTTCGGAACTACTGGCTCAACCACTAG 972 0.4352 MNYHITMLISLDFGFLRLPNPNLLHTKTPMSFLHLPRLSSPSFSRLSSRTFTTLLHPPPKSTLTNTNPESNQLSTITPKPETLSLEKLFIPPNTHLTHEDARILNGSNILLSNYATGAKIVQADFVKSSPGTGDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKNLALTSKKPGKTQLINHFRVNDNWYLVDLPGYGYASAPHELRMDWAKFTKDFLLNRSTLVSVFLLIDASIPAKKIDLEYARWLGENQIPMTLIFTKCDKRKKAKNGGKKPEENVNDFQELIRSSFETVPPWIMTSSVTHQGRDEILLHMAQLRNYWLNH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00057 323 Gene3D - 115 319 IPR027417 -
Vivi3g00057 323 Hamap Probable GTP-binding protein EngB [engB]. 128 317 IPR019987 GO:0005525
Vivi3g00057 323 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 63 323 - -
Vivi3g00057 323 MobiDBLite consensus disorder prediction 57 76 - -
Vivi3g00057 323 Pfam 50S ribosome-binding GTPase 143 260 IPR006073 GO:0005525
Vivi3g00057 323 CDD YihA_EngB 142 316 IPR030393 GO:0005525
Vivi3g00057 323 NCBIfam ribosome biogenesis GTP-binding protein YihA/YsxC 123 311 IPR019987 GO:0005525
Vivi3g00057 323 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 139 319 IPR030393 GO:0005525
Vivi3g00057 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00057 Vivi-Chr3 841885 844381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00057 K03978 - gmx:100784426 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00057 3 841885 844381 Vivi3g00057 3 841885 844381 ECH