Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00053 ATGATAGAAGAGAAAAAGGATCCTGGATTTGAATGGGGAAAAAAGAAAGGGTTCGGTGGTAAAAACAGGGAGGTGATTTTTTACGAATCGTTTATCTACGACGGTGTTGCTTACACTCTTAACGATTCGGTGTATCTTTACAAGGACGATGAACCTGAGCCTTTTGTTGGTAAAATAATCAAAATATGGGAAAGTGGTGATAGGAAGAAGAAAGTTAAGGTTCTATGGTTCTTTCGTCCCTGTGAGATTTTGAACTTTTTGGAAGGATATGAGGTGCGAGAGAACGAGTTGTTTTTGGCAGCTGGTGAGGGATTAGGGCTTGCGAATGTTAATCCTCTGGAAGCTATTGCTGGGAAATGCAATGTTGCTTGCATTTTAAAGGACAACAGGAACCCACATCCATTAGACGTAGATCTTCAAAATGCCGACTTTGTGTGCTATCGTTTCTTTGATGTTGGGAAGCATAAAATATTGGATAAGGTAGAAGATAAGATTGCTGGATTCGAAGTTAAAAATATTTTTAACAATTTAAATAGTCAAAAGCTTGGTGATCTTTCGAAACTTGGTTTAGATGAGAAAGAAGTTAGCGTGAAAGTCACAACGAGTAATGAAGCGGCAGCTCTTTCAAGTGAAAAAAACAATCAGCTTTTGGTTGAAAAACTAGATGGCAAGTGTTTTGACAATGTTGATTCCCGCGACAAGACCTTGCCTCAAGAGGAAGAGAAAGAGAATGGAGTTTATACGACTTCTTTGGCTAAACAAAAATCATTTGCTAAACTATCTCATTGCTCTAGAGATAGTTTGGAAATGAAAGAAAATTCTAAAATAGGAGGAAACGTCTCTATTGACAAGACTCTTTTGAAGTCTAAGACTAATTTAGAAATGGGTGGAAATGATATTGTTGGTATACCTGATCGACAAATCAACAAGCGATTGGGGGAAAGCAAGGTTTCTGAGAAAGAAAAATCTGGCATTTCTAATGCAAAGATAACAAATAATGTTAAAAATCGAAGGAACTATGATGAGGATGATGATGTGAAAGAAGTCCCTTCGAAAAAACCAAAGATTGACACGATGTCGGTTAAACACTCTGATGACAAGTTGCCTGACAGACAAATCAACAAACAATTGGGGGAGGGAAAGGCTTTTGAAAAGGAAAAATATGGTGCTTCGAGTGCAAGGAAAACAAATAATGTGCAAAATCGAAGGCACTATTACGATAATGATGATGATGATGAGAAGAAAGTCCCTTCAAAAAAGCTAAAGATTGACACGATGCCTGCTAAGCTCGCTCGTGACAAGTTGCGGAAAGAATCGTCTACAACTTCTCTAAACTTGGAGCACAAGCTAGATTACCGTGTAATGGAAGTTACTCAAAGACCAGACGTTGATAGAAGCAAATGGTTTATGTCAATGGGTTGGGAGGAAAGAATGAAAAATGCTCGTGAGCAAGGGAAACTTGTGCGGCTTGAAAATTTGGATCCTTCTTTAACTTCATCAGAAGTACAGAGTATTATTTGGCATGGCTTTGAAGAAAGCTGTACTGCAAAGATGATCCAGAAAACCGCATATTCTAGTCCTCTTTCTGGTCAAGCTTTTGTTATATTCAAGAAAAAGGAAGCTGCAGAGTCTGTTGTTAGAAAATTAGAGGAAGGTTGTTTCTTGATGTCAAATGGGCGTCCACTTTTGGGAAACTTTGAACTCCCCTGCTTGTCGGGAAAGAAGCCAATATTCTATGGTCATCATGCTATTGATCAACCTCGACAACGTGAGACGAAAGACGCACTATCTACTTCACATTGTTCTCAGCCCAACAACATTGAATATGATATGGCCTTAGAGTGGTGTTTACTACAAGAAAGAGAAGACAAATCTTGGAGAAGATTGTATCAGCGACAAGGCGAGGAGTTGAGAAAACTCAAAGCTAAGTTGAAGTCTAAAATCTAA 1947 0.3852 MIEEKKDPGFEWGKKKGFGGKNREVIFYESFIYDGVAYTLNDSVYLYKDDEPEPFVGKIIKIWESGDRKKKVKVLWFFRPCEILNFLEGYEVRENELFLAAGEGLGLANVNPLEAIAGKCNVACILKDNRNPHPLDVDLQNADFVCYRFFDVGKHKILDKVEDKIAGFEVKNIFNNLNSQKLGDLSKLGLDEKEVSVKVTTSNEAAALSSEKNNQLLVEKLDGKCFDNVDSRDKTLPQEEEKENGVYTTSLAKQKSFAKLSHCSRDSLEMKENSKIGGNVSIDKTLLKSKTNLEMGGNDIVGIPDRQINKRLGESKVSEKEKSGISNAKITNNVKNRRNYDEDDDVKEVPSKKPKIDTMSVKHSDDKLPDRQINKQLGEGKAFEKEKYGASSARKTNNVQNRRHYYDNDDDDEKKVPSKKLKIDTMPAKLARDKLRKESSTTSLNLEHKLDYRVMEVTQRPDVDRSKWFMSMGWEERMKNAREQGKLVRLENLDPSLTSSEVQSIIWHGFEESCTAKMIQKTAYSSPLSGQAFVIFKKKEAAESVVRKLEEGCFLMSNGRPLLGNFELPCLSGKKPIFYGHHAIDQPRQRETKDALSTSHCSQPNNIEYDMALEWCLLQEREDKSWRRLYQRQGEELRKLKAKLKSKI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00053 648 Pfam BAH domain 37 152 IPR001025 GO:0003682
Vivi3g00053 648 MobiDBLite consensus disorder prediction 312 366 - -
Vivi3g00053 648 MobiDBLite consensus disorder prediction 384 417 - -
Vivi3g00053 648 CDD RRM_SF 488 562 - -
Vivi3g00053 648 FunFam Bromo-adjacent homology (BAH) domain-containing protein 6 157 - -
Vivi3g00053 648 PANTHER PROTEIN ANTI-SILENCING 1 3 647 - -
Vivi3g00053 648 ProSiteProfiles BAH domain profile. 36 161 IPR001025 GO:0003682
Vivi3g00053 648 MobiDBLite consensus disorder prediction 335 366 - -
Vivi3g00053 648 MobiDBLite consensus disorder prediction 400 417 - -
Vivi3g00053 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 486 569 IPR000504 GO:0003723
Vivi3g00053 648 SMART BAH_4 36 162 IPR001025 GO:0003682
Vivi3g00053 648 Gene3D - 5 160 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00053 Vivi-Chr3 714207 731418 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00053 - - cam:101508998 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00053 3 714207 731418 Vivi3g00053 3 714207 731418 ECH