Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00039 ATGGGTATAACAGAAGCATGTTCCAAATTCATGGTTGAGTTTTTACAAGCATTCAAAAACTCACCACCAAGCTCAATGCCTCATCATGATCAAGAGAATATTCTCAAGCTCGACGAAAGGATGGTTCGAGCTCTCGTTACCGTCTTTGGAATGGAAGCAAATGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTTGTGGAAAAGCTTGGTTTGATCTATGGTTGTGATCAGAAGGATAACAAGGTCTTTCAAGACGACGGCGAAGAAGATGAAGAAGTGGTTGTAGAAGAAGTACTTGGTGAATTGGAGGATATGTCATCTAAGAGAAGTGAGTTGTTGGTTGAAGCTTTCAAGATATTTGATGAGGATGGTGATGGATATATAGATGCAATGGAGTTGAAGAGAGTGCTTGATTGTTTGGGTTTGGATAAAGGTTGGGATATGAACACAATTGAAAGGATGGTTAAGGTTGTGGATTTGAATTTTGATGGAAAAGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAG 531 0.3898 MGITEACSKFMVEFLQAFKNSPPSSMPHHDQENILKLDERMVRALVTVFGMEANGRIKKENARQVVEKLGLIYGCDQKDNKVFQDDGEEDEEVVVEEVLGELEDMSSKRSELLVEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIERMVKVVDLNFDGKVDFGEFELMMG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00039 176 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vivi3g00039 176 Gene3D - 29 176 - -
Vivi3g00039 176 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Vivi3g00039 176 PANTHER CALCIUM BINDING PROTEIN 106 175 - -
Vivi3g00039 176 SMART efh_1 150 176 IPR002048 GO:0005509
Vivi3g00039 176 SMART efh_1 112 140 IPR002048 GO:0005509
Vivi3g00039 176 ProSiteProfiles EF-hand calcium-binding domain profile. 146 176 IPR002048 GO:0005509
Vivi3g00039 176 CDD EFh 113 171 IPR002048 GO:0005509
Vivi3g00039 176 SUPERFAMILY EF-hand 35 175 IPR011992 -
Vivi3g00039 176 Pfam EF-hand domain pair 113 175 IPR002048 GO:0005509
Vivi3g00039 176 FunFam Calmodulin A 101 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00039 Vivi-Chr3 520704 521444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00039 100 175 EF-hand Containing Proteins AT4G20780 53.165 2.10e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00039 - - gmx:100527700 239.195