Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00003 ATGAGCGCGACGCAACTGTTTCACACGGCGCTGCCACCGTCGCTCACACCTTGTTGCCGATGTAGCAACAACATCCGCGTAACCGCCACCGCACTGGGGCTGAAGCATGGGTGGATCCTCCCAAGCACGAAGAAAGCGGTTGTTGGTTCAAGAATAGTAAAGTGTATGGCGAATCCAAAGAGAGTTAAAATGGTGGCTAAACAAATTAGGAGAGAACTTTCTGAAATGCTTATCTCCGATAATGTCTTGCTGTTTGCCATTCTTCCAGAAGCTTCCTTCGGTGCCGATAGATACCTCTCGTCTGTCACCACCATCACCGACGTCGAAATCACCGCCGATTTACAGTTAGTTAAGGTGTATGTATCGGTTTTTGGAGATGAAAGAGGGAAGCAAGTAGCTATGGCTGGGTTGAAGTCAAAGGCTAAATATGTTCGGAGTCAGTTGGGGAAGCGAATGAAGTTGCGGTTAACTCCTGAGATACGCTTTTTTGAGGATGAATCTATTGAAAGAGGAAGCAGGGTCATTGCAATATTAGATGAAATTAAGAATGAGAATAGTGGAACAACTCAAAGCGTGGAACAGTTGGATTCATTGGCAAACGAAGATGAAATTGAGCAGTTGAATTCATCGGCAGATGAGGATGACGATGACTGGGATGATGAAGACCCTGATGAAGAAGGTATCATTTATGTGGAATAG 699 0.4535 MSATQLFHTALPPSLTPCCRCSNNIRVTATALGLKHGWILPSTKKAVVGSRIVKCMANPKRVKMVAKQIRRELSEMLISDNVLLFAILPEASFGADRYLSSVTTITDVEITADLQLVKVYVSVFGDERGKQVAMAGLKSKAKYVRSQLGKRMKLRLTPEIRFFEDESIERGSRVIAILDEIKNENSGTTQSVEQLDSLANEDEIEQLNSSADEDDDDWDDEDPDEEGIIYVE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00003 232 MobiDBLite consensus disorder prediction 206 232 - -
Vivi3g00003 232 Gene3D - 56 172 IPR015946 -
Vivi3g00003 232 SUPERFAMILY Ribosome-binding factor A, RbfA 56 181 IPR023799 -
Vivi3g00003 232 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 48 232 IPR000238 GO:0006364
Vivi3g00003 232 ProSitePatterns Ribosome-binding factor A signature. 144 165 IPR020053 GO:0006364
Vivi3g00003 232 MobiDBLite consensus disorder prediction 197 232 - -
Vivi3g00003 232 NCBIfam 30S ribosome-binding factor RbfA 56 183 IPR000238 GO:0006364
Vivi3g00003 232 Pfam Ribosome-binding factor A 61 177 IPR000238 GO:0006364
Vivi3g00003 232 Hamap Ribosome-binding factor A [rbfA]. 60 178 IPR000238 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00003 Vivi-Chr3 46073 48704 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00003 K02834 - oeu:111412086 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00003 3 46073 48704 Vivi3g00003 3 46073 48704 ECH