Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06753 ATGGCAGGAAGAGGCAAAACCCTAGGATCCAGTGGCGCTGCCAAGAAGGCAACCTCAAGGAGCAGCAAGGCTGGCCTTCAATTCCCCGTCGGCCGTATCGCTCGTTTCCTCAAGGCCGGTAAATACGCCGAGCGTGTCGGTGCCGGTGCTCCTGTGTACCTTGCCGCCGTCCTTGAATATCTCGCCGCCGAGGTTCTTGAATTGGCTGGAAACGCTGCGAGGGACAACAAGAAGACTAGAATTGTGCCTAGACATATTCAATTGGCTGTTAGGAACGATGAGGAATTGAGCAAGCTTCTTGGCGATGTTACCATCGCTAACGGTGGTGTTATGCCCAATATTCACAACCTTTTGCTCCCAAAGAAAGCTGGTGGTTCCTCCAAGGGTGCTGGTGCCGATGAAGAGTAA 408 0.5319 MAGRGKTLGSSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSSKGAGADEE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06753 135 PANTHER HISTONE H2A 12 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 CDD H2A 9 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Vivi2g06753 135 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g06753 135 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
Vivi2g06753 135 Pfam Core histone H2A/H2B/H3/H4 15 91 IPR007125 GO:0003677
Vivi2g06753 135 Pfam C-terminus of histone H2A 94 128 IPR032454 -
Vivi2g06753 135 ProSitePatterns Histone H2A signature. 24 30 IPR032458 -
Vivi2g06753 135 FunFam Histone H2A 1 130 - -
Vivi2g06753 135 PRINTS Histone H2A signature 45 60 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 PRINTS Histone H2A signature 16 38 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 PRINTS Histone H2A signature 60 73 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 PRINTS Histone H2A signature 102 120 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 PRINTS Histone H2A signature 74 88 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vivi2g06753 135 SMART h2a4 5 125 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06753 Vivi-Chr2 205883317 205884208 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06753 K11251 - tcc:18593695 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06753 2 205883317 205884208 Vivi2g06753 2 205883317 205884208 ECH