Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06625 ATGAACAAACCCACCCTGCTTCCTGACCAAGACCAACAACACCATCAACATCAAGATTTCTTTTACGAATCACACGACCGCTTACTCTCTCTCTCCTCCTCTTGCTCCTGCTCCAACTCCAACTCTGACCAAGAACAAGAAGACGAACAAGATAATAACAACAACATCCTGAACTGCAATAACAATAACAGTATTTGCAATTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCCCAACCTACCTCCGTCTCCGAACGAAGAACCCGTCTCCTCCAAACCATAGGTTTATCTTCCGACCCGACTCTCTCACGCGGAAACCCTATCCCTCCTTACAATGCCATGTTCCGATCTAAATCTGACGGTTACAATAATTCTCTCTCCAATGAACCTTCTAATTCTTCTTATTCTTCTCCTTCTTCTTGTTATGTAAATAACTCTACTCCCGGTAATTCCGGCGGATCCCCCGGGAAACCTCCGTCTGGAAAGAATAATTCTAGAAGAAGTCATTCCGGCGCTGATTTCTTGCCGGGGAGTTCGGGTTCTGCGGCGGAGGTTGTTGAGACGGTTGTGTCGACGGTGGAGATTGCGGTTTCTGGGGAGGCTGGTGAGGCGGAGTGTGGTGAAATTGAAAGAATTGAAAGAGGGGAAGAAGAGCAAGCGTGTACTATTAGAGATCTTGACAATGGGAAGGAGTTTGTTGTGAAGGAAGTTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAGGTTGGGACTGGGAGACAGTTGACTATGGAGGAGTTTGAGATGACGGTTGGTCATTCGCCGATTGTGCAGGAGCTTATGCGGCGGCAGAATCACGAGGAGACTGGGGATGGAATTGGGGGGAGTGGAGGTGGTGGTAGTGGTGGTGGAAGTGGGAATGGGAGTGGGAATGGAAATTCTATTAAGGGGAAGAAGAAAGGGGCGAGTTGGTTGAAGAGTATTAAGAGTGTTGCAAGTTCGATGGCAGGGAATAAGGAGAGGCGGAGCAGTGATGAGAGGGATACTTCGTCGGAGAAAGGCGGTAGGAGGTCGAGTTCGGCTACCGATGATAGTCAGGATGGTTCGTTTCATGGGCCGGAGAGGGTGAGAGTGAGACAATATGGGAAGTCGTGTAAAGAGGTAACTGCATTGTATAAGAGTCAAGAGATTCAGGCTCATAATGGGTCAATTTGGAGTATTAAGTTTAGTTTAGATGGGAAGTATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAAGGTGAGTTGTTGCTTATGGAGAAACAGGAAGATGTTAATGTCAATATGTTGTTTCTTGTGAATGGGTCGCCGGAACCCACTTTGTTGTCTCCTTTGGCGGATAATCTTCCAGAGAGGAAGAGAAAGGGGAGATCGTCTGTTAGTAGAAAGTCGTTGAGCTTGGACCAGTTTGTGGTCCCAGAAAATGTGTTTGCACTCACTGAAAAACCCATTTGCTCCTTTCAGGGACATTTGCATGATGTGCTTGATCTCTCCTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTATCTAGCAAGTCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATCAGTGGTTCTTTGGATGCTAAGGTTCGTATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTTCATGAGATGGTCACTGCTGCATGTTATACGCCTGATGGCCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATTTGCAGAACAAAAAAAAGAAATCAAATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGTAGTTCATCGGAAGTACTTATCACTTCTGCTGATTCTCGAATTCGGGTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGTTTTCGGAACGCAAGTAGTCAGATTTCAGCCTCCCTCACAGCAAATGGCAAGTATATTGTTGCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCCGATTGCAGACCTAACAGAAGTAAAAGTGTCACCGTGACACAGTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACAAGAGCTTGATAACAATAACGATGAAATCGCATCAGCCAATCATCCTCCTACTCCTGTAGAGGAAAACTTTGGTGTTGAGGGTTCACGGTCTGCTTCAGGTTACAATAGTCCGCATCATGCAACCATTGCGAGTGCGACAAACAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTCCTGGCTGCTAGAAATCATCAAAGCCCTCGCGTAAGTACGGATTTCTCAAATGGGGTAAGTCAAAAAATGTCAGCTTGGGGCATGGTGATTGTTACTGCCGGTCTACGAGGTGAGATTAGAACTTTCCAAAATTTTGGATTGCCACTGCGAATATAA 2640 0.447 MNKPTLLPDQDQQHHQHQDFFYESHDRLLSLSSSCSCSNSNSDQEQEDEQDNNNNILNCNNNNSICNYNFALNSYDIWISQPTSVSERRTRLLQTIGLSSDPTLSRGNPIPPYNAMFRSKSDGYNNSLSNEPSNSSYSSPSSCYVNNSTPGNSGGSPGKPPSGKNNSRRSHSGADFLPGSSGSAAEVVETVVSTVEIAVSGEAGEAECGEIERIERGEEEQACTIRDLDNGKEFVVKEVREDGMWNKVKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNHEETGDGIGGSGGGGSGGGSGNGSGNGNSIKGKKKGASWLKSIKSVASSMAGNKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWRVVESERKGELLLMEKQEDVNVNMLFLVNGSPEPTLLSPLADNLPERKRKGRSSVSRKSLSLDQFVVPENVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKSVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQQELDNNNDEIASANHPPTPVEENFGVEGSRSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNHQSPRVSTDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 579 - -
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 425 - -
Vivi2g06625 879 MobiDBLite consensus disorder prediction 328 372 - -
Vivi2g06625 879 PANTHER WD REPEAT DOMAIN 44 12 876 IPR040324 -
Vivi2g06625 879 MobiDBLite consensus disorder prediction 99 183 - -
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 433 IPR001680 GO:0005515
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 539 - -
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 579 IPR001680 GO:0005515
Vivi2g06625 879 MobiDBLite consensus disorder prediction 282 314 - -
Vivi2g06625 879 MobiDBLite consensus disorder prediction 297 311 - -
Vivi2g06625 879 Gene3D - 378 737 IPR015943 GO:0005515
Vivi2g06625 879 FunFam Transducin/WD40 repeat-like superfamily protein 350 454 - -
Vivi2g06625 879 SUPERFAMILY WD40 repeat-like 387 716 IPR036322 GO:0005515
Vivi2g06625 879 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Vivi2g06625 879 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Vivi2g06625 879 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Vivi2g06625 879 Pfam WD domain, G-beta repeat 541 578 IPR001680 GO:0005515
Vivi2g06625 879 Pfam WD domain, G-beta repeat 675 713 IPR001680 GO:0005515
Vivi2g06625 879 Pfam WD domain, G-beta repeat 391 423 IPR001680 GO:0005515
Vivi2g06625 879 Pfam WD domain, G-beta repeat 500 535 IPR001680 GO:0005515
Vivi2g06625 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 545 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 581 619 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 632 671 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 498 536 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 385 424 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 539 578 IPR001680 GO:0005515
Vivi2g06625 879 SMART WD40_4 672 713 IPR001680 GO:0005515
Vivi2g06625 879 MobiDBLite consensus disorder prediction 119 177 - -
Vivi2g06625 879 FunFam WD repeat-containing protein 44 486 752 - -
Vivi2g06625 879 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06625 Vivi-Chr2 203041325 203046817 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06625 K20241 - gmx:100815065 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06625 2 203041325 203046817 Vivi2g06625 2 203041325 203046817 ECH