Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06617 ATGGATCGGCTTCTCAAAGCTGCCAGAGCTTCCGGTTCTCTCAACCTCTCCAACCGCTCCCTCAGTGAAGTACCCGATGAGGTTTATCGGAATCTTGAAGGCGTCGGTGGAACTGATGATAAGTGGTGGGAGGCTGTGGAGCTTCAGAAACTCATTTTAGCTCACAATAGTATTGAGTTGTTAAAGGAAGATATCAGAAATTTAGGTTTTCTTATCGTGTTGAATCTTAGCCACAATAGTCTTTCTCAGCTGCCTGCCGCCATAGGAGAACTACCTCAGTTGAAGATGTTGGATGTTTCGTACAATTCGTTGGTTAGTATACCAGAGGAGATTGGATCAGCTGCGTCGCTTGTGAAATTTGATTGTTCAAATAATCAGCTCATAGAGTTTCCTAGCTCACTGGGAAGATGTTTGGATTTGTCGGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAATTGTTCCAAAATGTCTAAGCTAGATATGGAGGGAAACAAGCTTACAGTGATATCCGAAAATATCATTTCATCATGGACAATGCTTACTGAATTAAATGCAGCAAAAAATATGCTGAATGGCATACCATCCGGCATTGGAGGCCTTTCACGTTTAATCCGTCTTGATCTCCATCAGAACAGAATTTCATCAATCCCTTCATCAATCATTGGTTGTCATTCACTTGCAGAGTTTTATTTGGGGAATAACAGTCTTTCTACAGTACCAGTGGAAATAGGGGAACTTTCTCGGCTCGGGACATTAGATCTGCATTCTAACCAGCTGAAAGAGTATCCCGTGGAGGCATGTAAATTGAGTCTTTTAGTCTTGAATCTTTCAAATAATTCACTGAGTGGGTTACCTCCTGAATTGGGCAAGATGACTAGCTTGAGGAAACTTCTACTTAGTGGAAACCCATTGCGGACTCTTCGAAGCTCATTAGTCACCGGACCTACTCCAGCATTACTAAGATTTCTCCGAAGTAGACTTTCTGAAGATTCTGAAGCTACAACCACGTCAAAAAAAGACATAATTGCAATGGCTACCCGATTATCTATCACTTCAAAGGAATTTTCTATGGGAGGGCTGGGGTTGAGTGCCATTCCATCAGAAGTATGGGAATCTGAGGAGGTCATAAAACTTGATCTTTCCAAAAACTCAATCCAGGAATTGCCAGTTGAACTTTCTTCTTGTGTTTCTCTCCAGACATTGATTTTATCAAAGAATCAAATTAAAGACTGGCCAGGTTCAATTCTTCAATCACTTTCGAGTCTGTCTTGTTTGAAGCTAGACTACAACCCCCTCAGACAGATACCTTCAAATGGTTTTGAAGTGGTGCCTAAGCTTCAGATCCTGGATCTAAGTGGTAACACAAGTTCATTACTAGACAGTCCTGCATTTTCTAGTTTGCCAAACCTGCAAGAGCTTTATCTGAGAAAAACGGGTCTCACTGAAGTCCCATCAGATATATTGGGATTGCATCAACTACGGATCCTTGACTTGGGTCAGAATTCCCTTCAATCGGTTCCAGAGGGGCTAAAAAATATGACCTCTCTAGTGGAGCTTGACCTATCCGATAACAACATCTCTGCCCTTCCACCTGAGCTGGGTCTGCTGGAGCCAAGCCTTCAGGCATTGAGACTTGATGGGAACCCACTTAGAAGCATTCGGAGGCCTGTCTTGAATAAAGGAACTAAAGCTGTTCTGCAATATTTGAAGGACAAATTGCCAGAGCAGTAG 1752 0.4229 MDRLLKAARASGSLNLSNRSLSEVPDEVYRNLEGVGGTDDKWWEAVELQKLILAHNSIELLKEDIRNLGFLIVLNLSHNSLSQLPAAIGELPQLKMLDVSYNSLVSIPEEIGSAASLVKFDCSNNQLIEFPSSLGRCLDLSDLKGSNNLIASLPEDLANCSKMSKLDMEGNKLTVISENIISSWTMLTELNAAKNMLNGIPSGIGGLSRLIRLDLHQNRISSIPSSIIGCHSLAEFYLGNNSLSTVPVEIGELSRLGTLDLHSNQLKEYPVEACKLSLLVLNLSNNSLSGLPPELGKMTSLRKLLLSGNPLRTLRSSLVTGPTPALLRFLRSRLSEDSEATTTSKKDIIAMATRLSITSKEFSMGGLGLSAIPSEVWESEEVIKLDLSKNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILQSLSSLSCLKLDYNPLRQIPSNGFEVVPKLQILDLSGNTSSLLDSPAFSSLPNLQELYLRKTGLTEVPSDILGLHQLRILDLGQNSLQSVPEGLKNMTSLVELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRPVLNKGTKAVLQYLKDKLPEQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06617 583 Pfam Leucine rich repeat 475 533 IPR001611 GO:0005515
Vivi2g06617 583 Pfam Leucine rich repeat 255 311 IPR001611 GO:0005515
Vivi2g06617 583 Pfam Leucine rich repeat 404 461 IPR001611 GO:0005515
Vivi2g06617 583 Pfam Leucine rich repeat 47 104 IPR001611 GO:0005515
Vivi2g06617 583 ProSiteProfiles Leucine-rich repeat profile. 522 543 IPR001611 GO:0005515
Vivi2g06617 583 Gene3D Ribonuclease Inhibitor 1 177 IPR032675 -
Vivi2g06617 583 PANTHER - 146 313 - -
Vivi2g06617 583 FunFam Leucine-rich repeat-containing protein 40 471 579 - -
Vivi2g06617 583 Gene3D Ribonuclease Inhibitor 274 330 IPR032675 -
Vivi2g06617 583 SMART LRR_typ_2 450 473 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 545 567 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 426 449 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 403 425 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 497 519 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 253 276 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 298 321 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 380 402 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 160 183 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 474 496 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 91 114 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 207 230 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 68 89 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 520 543 IPR003591 -
Vivi2g06617 583 SMART LRR_typ_2 277 297 IPR003591 -
Vivi2g06617 583 Gene3D Ribonuclease Inhibitor 178 273 IPR032675 -
Vivi2g06617 583 Gene3D Ribonuclease Inhibitor 465 579 IPR032675 -
Vivi2g06617 583 SUPERFAMILY L domain-like 42 318 - -
Vivi2g06617 583 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Vivi2g06617 583 SMART LRR_bac_2 68 87 - -
Vivi2g06617 583 SMART LRR_bac_2 275 295 - -
Vivi2g06617 583 SMART LRR_bac_2 426 445 - -
Vivi2g06617 583 SMART LRR_bac_2 114 133 - -
Vivi2g06617 583 SMART LRR_bac_2 91 110 - -
Vivi2g06617 583 SMART LRR_bac_2 497 516 - -
Vivi2g06617 583 SMART LRR_bac_2 207 226 - -
Vivi2g06617 583 ProSiteProfiles Leucine-rich repeat profile. 404 425 IPR001611 GO:0005515
Vivi2g06617 583 Gene3D Ribonuclease Inhibitor 331 464 IPR032675 -
Vivi2g06617 583 SUPERFAMILY L domain-like 362 558 - -
Vivi2g06617 583 ProSiteProfiles Leucine-rich repeat profile. 209 230 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06617 Vivi-Chr2 202812456 202821924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06617 68 557 Receptor kinase-like Gene Family AT4G08850 29.346 1.39e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06617 - - gmx:100788118 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06617 2 202812456 202821924 Vivi2g06617 2 202812456 202821924 ECH