Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06135 ATGAGAAACATTAAAATATCAGCATTCTTCATTCTTCTCTTTCTCTCTATACTATCACTTCATGTTCAATGCAGACCTCTTCCTACAAAACTTGTCTCTAATGGAGTTGATAATGTTGAATCGTCAGAACAAGATTCTTTTCTGCTTCTTAATAATGAAGCGGAGTATTGTAAACAAATGTATGGTTTCTTGCCATGTTCTAATAACATACTTGGTCATTTGTTTCTGATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTGCGGGAGGTGAACAGGTTTTCAAGATTCTTGGACCTGGTGTTTTTGGTGCTAGTGCTTTTGATATTCTTGGTGCTCTTCCTGAGTCATTAATTCTTCTTGTTACTGGACTTTCAAGTGATAAGGAGAGGGCACAAGAATCTGCTTCCACTGGTGTTGGTTTGTTAGCAGGATCATCCATCTTGCTTCTCACAGTACTATGGGGAACTTGTGTTATTGTTGGCAAACAAGACTTGAAAAATGAATCTAATTCATATTGCTCAAATTCATCAACTGGAAGAATAAAACAATCTTTGATTGGTTATGGCATTACTATGGATGTAGACACTAGAAAGATGGCAAGAAACATGGTTTTCTCTGTTGCACCACTCCTCATAATGCAGATTCCCACATTATTTAATTTCTCTACATCGTCGCGCAATGTCACTTTGATGATTTCTCTCATCATTGCTGTCTCTTTTCTCATCTCATACTTCATTTACCAGATCTTTAAACCGCAGATAGAAAAAACACGGCTAGAATACATAAAGCATGATGATCTAATATTGAGAATTTTCCAACGCGTTGAAAAGCAAACTCTACAAAAGATCTTAGCTGAGGATGGAACTCCCAATGTAACTGCCATAAGCGGGTTATATAATGAGTTCAGTCAACATGGGGGAAAGCACTTATTAGCTTCTGAAGTAAAAGAGCTTCTGCTCGGGAACAATTTAGCGAACACGAACATCAAAGATGAACAGATAGAAGACATGGTAAAAGCTTTTGACAAAAATGGTGACCAAATTATATCAAGGGAAGAATTTGTTGATGGTTTAAAAGAATACATTAACCAAACTAAGCATGCTTTGGATCGAAAGTATCTACCCAAAGAGTCCATGAACAAAATGTATCAGGCGTTTATTAAGCCGTGGATTGAAAACGTTAGAAAAGAACGCGAATTGAAGGGACGTCTTATTTCTGAAGTTTTAAGTCATGCTCAGAGTGATATGGTTGGTAAGCTGTACAACGAAGATGGTACACCCGATAAAGAAGCGATCAAAAGGTTGTTTGAGGAAGTTAACATCGATGGCGATGACCATGTTTCGAGAACCGAGTTAGAAAAAATAGTGAAGGACATTCAGTTAGGTAAGGGTGTAGATTCAGAAGAAGCAGTCACAAAACTACTTCAAGATCTTGATGTCAACAAAGACAATGAAATCAGTGAGAATGAATTTGTTGATGGTTTCACCAAATGGATTAGCTCAAATTCCAACAAAACTTCTACCTCAAAATCTTCTCATCATCATCATCATCATGAAACTCATCAAACATGGGAAGATGTTGAGAAGGTAATGGAAGAGAATCAATCCAAAGGAGTGTCTGCATGGTTTGAAGCTATAGCATATTTGGTGTTGGGGATTACTATGCTGTCACTTCTTGCTGAGCCTTTAATAGCAAGTGTTCAAAAATTCTCCGAAGCCGCGGGAATTTCATCGTTTTTCATCTCGTTTATTTTAGTCCCTTTGGCTACAAATTTCAGAGAAGCTACCTCAGCAATCAAAGAAGCTAGTCACAAAAAAAGTAGTAATACTTCTCACACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGTTTTGTGGTGATATCTATTCTTATATATATGAGAGACATTACTTGGGAATTTTCAGCTGATGTATTGGTGGTGGCAATTGTTTGTGCTGTGATGGGTCTTGCTTCGGCTTTTCGGACCACTTTTCCTCTTTGGACATCCTTTCCTGCATACCTGTTGTACCTAATATCTTTGCTTTTGGTTTATGTTCTCAAAGATGTTCTCAATTATATGTAG 2112 0.3722 MRNIKISAFFILLFLSILSLHVQCRPLPTKLVSNGVDNVESSEQDSFLLLNNEAEYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQVFKILGPGVFGASAFDILGALPESLILLVTGLSSDKERAQESASTGVGLLAGSSILLLTVLWGTCVIVGKQDLKNESNSYCSNSSTGRIKQSLIGYGITMDVDTRKMARNMVFSVAPLLIMQIPTLFNFSTSSRNVTLMISLIIAVSFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVTAISGLYNEFSQHGGKHLLASEVKELLLGNNLANTNIKDEQIEDMVKAFDKNGDQIISREEFVDGLKEYINQTKHALDRKYLPKESMNKMYQAFIKPWIENVRKERELKGRLISEVLSHAQSDMVGKLYNEDGTPDKEAIKRLFEEVNIDGDDHVSRTELEKIVKDIQLGKGVDSEEAVTKLLQDLDVNKDNEISENEFVDGFTKWISSNSNKTSTSKSSHHHHHHETHQTWEDVEKVMEENQSKGVSAWFEAIAYLVLGITMLSLLAEPLIASVQKFSEAAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSHTMYEIYGAVFMNNILGFVVISILIYMRDITWEFSADVLVVAIVCAVMGLASAFRTTFPLWTSFPAYLLYLISLLLVYVLKDVLNYM 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06135 703 MobiDBLite consensus disorder prediction 508 527 - -
Vivi2g06135 703 CDD EFh 437 501 IPR002048 GO:0005509
Vivi2g06135 703 SMART efh_1 475 503 IPR002048 GO:0005509
Vivi2g06135 703 SMART efh_1 338 366 IPR002048 GO:0005509
Vivi2g06135 703 SMART efh_1 436 464 IPR002048 GO:0005509
Vivi2g06135 703 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Vivi2g06135 703 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Vivi2g06135 703 Pfam Sodium/calcium exchanger protein 551 694 IPR004837 GO:0016020|GO:0055085
Vivi2g06135 703 Gene3D - 294 374 - -
Vivi2g06135 703 Pfam EF-hand domain pair 334 365 IPR002048 GO:0005509
Vivi2g06135 703 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Vivi2g06135 703 SUPERFAMILY EF-hand 319 508 IPR011992 -
Vivi2g06135 703 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Vivi2g06135 703 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 60 695 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vivi2g06135 703 Gene3D - 375 515 - -
Vivi2g06135 703 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Vivi2g06135 703 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06135 Vivi-Chr2 195180729 195184455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06135 387 696 EF-hand Containing Proteins AT1G53210 38.769 2.00e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06135 - - gmx:100799062 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06135 2 195180729 195184455 Vivi2g06135 2 195180729 195184455 ECH