Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06127 ATGTCTCTCTCTTTCACTTCCCGTTCACGTTCTCGCTCTCGTTCCCGCTCCACTTCCAACCACACACTCTTCCGCTTCCTCTTCATCGGCATCGCCGCAATCCTCTGCACTCACGCCCACGCTCGTTTCGTCTCGCACGATCTCGTTTCCGATGGATTCATTTCCAACGTTCTTCGTCTCCCCACGGATCCGGCAGTTGAATCCGCCTGTGAACAGACCTATGGATTCTTACCGTGCACCACCACCGTTCTGGGAAACTTGTTTCTCATTATTGTTTATGGGTTTCTCATGTACACCGCTGCTACGTTTTTGTCCAACGGGAGTGAGCTCTTGCTTGAGATCTTGGGTCCCGGCATTGTTGGGGGACTGTTTCTTCCTATCCTTGGTGCTCTGCCTGATGCCATGCTTATTCTCGTGTCTGGGCTTTCAGGAAGTGCAGAAGTTGCTCAAAGTCAGGTAGCTGTTGGAATGGGACTGCTAGCTGGATCAACGGTGCTGCTTCTGACTATAATATGGGGGACTTGCGTGATTGTGGGCAAGTGTGACATCGAGGATTCCATTGCACTAGATTCAACAGACACTAGGGGATTCAGTCTAACTGGTTCTGGTGTTAGTACGGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTATATCCGTCGTTCCATTCCTGATTGTTCAATTACCACAAATGCTCAATTCAACTTCTGGAAGGCACTTGGCTGTTTTGATTGGTCTTATTATCTCTGTCTGTTTATTGATAACTTATTGCCTTTACCAGATTTTCCAACCCTGGATACAAAAACGAAAATTGGAATATATTAAACATAAGCATGTTATTTTGGGACTTCTGAAACATTTGAAGATGCGTTCATTGGGAAGGCTTCTGAAAGATAATGGCGAACCCGATACTGACGTGATTAGAAAGTTATTTGCCACAATTGATGAAAATAAAGATGGACATCTTACTCACGGTGAAATGACAGCACTGGTTGTTGGAATTCAGTTCGAGGAGATTGAGCTGGACCATGACGACGCTGTGACAAGAATAATGGCGGATTTTGATACTTCTCGTAATCAACATATTGACGAAACAGAGTTTGTTAATGGAGTCTCCAGATGGCTTCAAGGGGCCAGGCGTTCTAAAGTTCAAGGCGGCGATGCTGGTGCGCACACCGTGAAGTTTTTAAGTGATTTTCACTCCGAAACAAAGAGGGAACATGATCTTCTGGATGTGGGGGGTCAGGGTGAAGAAACCACTGAAGAAGTTAAGAATGCTAGATGGATTTCCATCAAAGCAGGACTGCTGCTGCTACTTGGTGCTCTTATCGCTGCTGCATTTGCCGATCCGCTGGTTGGTGCAGTTGATGACTTCTCCACTGCTACAAGTATTCCAGCTTTCTTCATTTCCTTCATTTTTCTACCTCTAGCAACCAATTCAAGTGAAGCTGTATCAGCAATAATTTTCGCTAGTCGTGATAAGAGGCAAACAGCATCATTAACATTTTCCGAGATATACGGTGCAGTTACAATGAACAATGTACTATGTCTATCGGTCTTCTTGGCACTCGTATACGTGAGGGGATTGACATGGAACTTCTCTTCGGAAGTGCTGGTTATTCTCATCGTCTGCGTTGTGATGGGCGCGTTCGCCAGTTTCCGCACTGTTTTCCCTCTATGGACATCAATACTGGCTATCCTTCTCTATCCATTTTCCTTGGCATTGGTCTATGTTCTTGATTATGTATTTGGGTGGTCATAG 1764 0.4518 MSLSFTSRSRSRSRSRSTSNHTLFRFLFIGIAAILCTHAHARFVSHDLVSDGFISNVLRLPTDPAVESACEQTYGFLPCTTTVLGNLFLIIVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSAEVAQSQVAVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIALDSTDTRGFSLTGSGVSTDIWTSYAARIMVISVVPFLIVQLPQMLNSTSGRHLAVLIGLIISVCLLITYCLYQIFQPWIQKRKLEYIKHKHVILGLLKHLKMRSLGRLLKDNGEPDTDVIRKLFATIDENKDGHLTHGEMTALVVGIQFEEIELDHDDAVTRIMADFDTSRNQHIDETEFVNGVSRWLQGARRSKVQGGDAGAHTVKFLSDFHSETKREHDLLDVGGQGEETTEEVKNARWISIKAGLLLLLGALIAAAFADPLVGAVDDFSTATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWNFSSEVLVILIVCVVMGAFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06127 587 Pfam Sodium/calcium exchanger protein 88 264 IPR004837 GO:0016020|GO:0055085
Vivi2g06127 587 Pfam Sodium/calcium exchanger protein 436 578 IPR004837 GO:0016020|GO:0055085
Vivi2g06127 587 ProSitePatterns EF-hand calcium-binding domain. 316 328 IPR018247 -
Vivi2g06127 587 ProSiteProfiles EF-hand calcium-binding domain profile. 303 338 IPR002048 GO:0005509
Vivi2g06127 587 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 70 579 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vivi2g06127 587 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509
Vivi2g06127 587 Gene3D - 285 427 - -
Vivi2g06127 587 SUPERFAMILY EF-hand 302 377 IPR011992 -
Vivi2g06127 587 SMART efh_1 307 335 IPR002048 GO:0005509
Vivi2g06127 587 SMART efh_1 347 375 IPR002048 GO:0005509
Vivi2g06127 587 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 280 402 - -
Vivi2g06127 587 CDD EFh 308 373 IPR002048 GO:0005509
Vivi2g06127 587 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Vivi2g06127 587 Gene3D - 428 580 IPR044880 -
Vivi2g06127 587 Pfam EF-hand domain pair 306 370 IPR002048 GO:0005509
Vivi2g06127 587 FunFam Sodium/calcium exchanger NCL2 423 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06127 Vivi-Chr2 195056827 195060479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06127 39 587 EF-hand Containing Proteins AT1G53210 66.901 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06127 - - gmx:100809896 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06127 2 195056827 195060479 Vivi2g06127 2 195056827 195060479 ECH