Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06102 ATGGCCAACGGCAACCTTCCTCGAAGAATCATCAAGGAAACTCAGCGTTTGCTCAGTGAGCCAGAGCCGGGAATTAGTGCGTCTCCTTCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGTCCAACTCAGTCTCCCTATGAAGGGGGGGTTTTCAAGCTAGAACTGTTTTTGCCTGAAGAATATCCAATGGCTGGCTTACAGGTCAGGTTCCTGACAAAAATATATCACCCTAATATTGACAAGCTTGGCAGAATATGTCTTGATATGCTGAAAGATAGGTGGAGTCCTGTCCTTCGGATTCGCATTGTTCTGTTGAGTATTCAAGCTCTTTTGAGTGCACCAAACCCTGATGATCCACTTTCTGAGAACATTGCCAAGTATTGGAAATCTAACGAGGCTGAGGCTGTTGAGACTGCCAAGGAGTGGACCCGATTATACGCCAGCGGCGCTTGA 462 0.4654 MANGNLPRRIIKETQRLLSEPEPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAGLQVRFLTKIYHPNIDKLGRICLDMLKDRWSPVLRIRIVLLSIQALLSAPNPDDPLSENIAKYWKSNEAEAVETAKEWTRLYASGA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06102 153 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Vivi2g06102 153 FunFam Ubiquitin-conjugating enzyme E2 36 1 152 - -
Vivi2g06102 153 SMART ubc_7 8 151 - -
Vivi2g06102 153 SUPERFAMILY UBC-like 8 151 IPR016135 -
Vivi2g06102 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vivi2g06102 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 33 138 - -
Vivi2g06102 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Vivi2g06102 153 CDD UBCc 7 146 IPR000608 -
Vivi2g06102 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06102 Vivi-Chr2 194634083 194639153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06102 8 118 Miscellaneous Gene Families AT3G17000 26.496 1.86e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06102 K10580 - gmx:100805631 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06102 2 194634083 194639153 Vivi2g06102 2 194634083 194639153 ECH