Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06082 ATGGACACCATCCCTACTTCCATCAACAGTGGTTTGGGATGGAGTTCTTCCTCCTTGTTTCAACAATCAAATTGCTTTAACCTACCTTCTCTCCCTCTCAAACCAAAACCCTCTCTCGCCAAGTTTTCTCTCACTTGCTCCGCCGCCTCTTCTTCTTCCTCCGATCCTCTCTTGGTTAAAGCTGCCAGAGGAGACCCAGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCAGGAAGGTACATGGCTGCTTACAAAAAGTTAGCTGAAAAACATCCCTCCTTCCGAGAGAGGTCAGAGACAACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTAATTATTTTCTCCGACATCCTTACACCTCTACCTGCATTCGGGATTGATTTTGACATAGAAGATGTGAGGGGACCTGTAATACAATCGCCTATCCGCTCTGAGGAGGGATTAAACGTTTTGCACGCGATTGACTTCGACAAGCTTACATTTGTAGGAGATTCACTTAAAGCCCTGCGGAAAGAGGTTGGTGGTGATGCTGCTGTTTTAGGTTTTGTGGGAGCACCTTGGACATTGGCAACGTATATAGTTGAAGGCGGTACAACACGCACGTATACAAACATTAAAAGTATGTGCCATACGGCACCGCACATATTGAGGACTCTGCTTTCTCATTTGACAAAGGCAATAGCAGATTACATTGTTTTCCAAGTCGAATCTGGGGCTCACTGCATACAAATCTTTGATTCATGGGGCGGACAGCTACCTCCTCATATGTGGGAGCTTTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTGAAGAAAAAGTGCCCAGAGACACCACTTGTTCTTTATATAAATGGAAATGGTGGCTTTCTCGAGCGTATGATTGATACTGGAGTTGATGTTATTGGACTAGACTGGACAGTAGATATGGCTGATGGAAGAAGAAGATTAGGTAGCGGGATAGGCGTGCAAGGAAATGTGGACCCTGCTTGCTTATTCTCTCCTCTTACTGCCCTGACGGAAGAAATTCAGAGGGTTGTGAGGTCTGCGGGACCTAGACGGCACATTCTTAATCTTGGGCACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCTCATTTCTTTGACGTAGCTAGAAGCTTGAAGTTTGACACAGTCTCTCAAAATAACACTGCAAATGTAGTTTAA 1224 0.4518 MDTIPTSINSGLGWSSSSLFQQSNCFNLPSLPLKPKPSLAKFSLTCSAASSSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAAYKKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLNVLHAIDFDKLTFVGDSLKALRKEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTNIKSMCHTAPHILRTLLSHLTKAIADYIVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPETPLVLYINGNGGFLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPACLFSPLTALTEEIQRVVRSAGPRRHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTVSQNNTANVV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06082 407 FunFam Uroporphyrinogen decarboxylase 47 395 - -
Vivi2g06082 407 CDD URO-D 60 392 IPR006361 GO:0004853|GO:0006779
Vivi2g06082 407 Gene3D - 46 395 IPR038071 -
Vivi2g06082 407 Hamap Uroporphyrinogen decarboxylase [hemE]. 54 394 IPR006361 GO:0004853|GO:0006779
Vivi2g06082 407 SUPERFAMILY UROD/MetE-like 57 394 IPR038071 -
Vivi2g06082 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 71 80 IPR000257 GO:0004853|GO:0006779
Vivi2g06082 407 NCBIfam uroporphyrinogen decarboxylase 58 391 IPR006361 GO:0004853|GO:0006779
Vivi2g06082 407 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 50 395 - -
Vivi2g06082 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 190 206 IPR000257 GO:0004853|GO:0006779
Vivi2g06082 407 Pfam Uroporphyrinogen decarboxylase (URO-D) 57 392 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06082 Vivi-Chr2 193551295 193555161 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06082 K01599 - gmx:100807032 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06082 2 193551295 193555161 Vivi2g06082 2 193551295 193555161 ECH