Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05986 ATGACTACGCACACCCCAAAAAATATCCTGATTACCGGGGCAGCTGGATTCATTGCATCTCATGTTGCCAACCGGCTTATCCGGAAGTATCCCGACTACAAAATTGTTGTTCTCGACAAACTCGATTACTGTTCGAATCTGAAGAATTTACTTCCTTCAAAATCGGCCCCCAACTTCAAGTTCGTGAAGGGGGACATTGGAAGTGCCGACCTTGTTAACTATCTTCTCATCACTGAGGCGATTGACACGATTATGCATTTTGCTGCTCAAACTCATGTTGACAACTCTTTCGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTGTTGTTAGAAGCCTGCAAGGTAACTGGCCAGATTAAAAGATTCATCCATGTAAGCACTGATGAGGTCTATGGAGAGACCGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGCTACTTCCGACAAATCCGTACTCTGCAACAAAAGCTGGGGCGGAAATGCTTGTCATGGCATATGGTAGGTCGTATGGATTACCCGTGATCACAACACGTGGAAACAACGTCTACGGCCCGAATCAGTTTCCTGAAAAGTTAATTCCAAAGTTCATCCTCTTGGCATTGCAAGGCAAAGTTCTTCCGATTCACGGTGATGGTTCGAATGTGAGGAGTTATTTGTATTGTGAAGATGTCGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGACATGTTTACAATATTGGGACTAAGAAGGAAAGGAGAGTTATCGATGTAGCTACCGATTTATGCAGACTCTTCTCGAAGGATCCAGAGACTAGTATTAAGTTTGTAGAGAACAGACCGTTTAATGATCAGAGATACTTTCTTGATGACCAAAAGTTGAAGAATTTGGGCTGGGCGGAGAGAACTACTTGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTATATCAACAATCCCGATTGGTGGGGTGATGTGAGTGGTGCATTGCTCCCTCATCCGATGCTGGTGATGCCTGGTGGCATGGAGGAGAGACATTTCAATGGATCTGAAGACGAAAAGTCGGCATCATATGTCACAAATACGAATACTCGAATGTTGGTTCCAACAACCAAGAACGTTGGCTCTTCGCAGAAACATCCTCTCAAGTTCTTGATCTATGGAAGGACGGGTTGGATTGGGGGTTTACTGGGAAAATTGTGTGAGAAACAAGGGATTCCTTATGAGTATGGAAAAGGACGCCTTGAGGATCGCTCATCACTCGTGGCTGATATTCAAAACGTGAAACCCACTCATATTTTCAATGCAGCAGGAGTTACCGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACAGAAACAATCCGCGTCAACGTTGCTGGTACTTTAACATTGGCTGATGTCAGCAGAGAGCATAACCTTTTGATGATAAACTATGCTACCGGGTGCATATTCGAGTACGATGAAGCTCATCCTGAAGGTTCAGGCATTGGTTTTAAGGAGGAAGATACTCCTAACTTCAGCGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAAAGACTATGACAATGTATGCACTCTCAGAGTTCGCATGCCGATTTCATCCGACCTAAGCAATCCACGCAATTTCATCACCAAGATTTCACGATACAACAAAGTCGTTAACATTCCAAACAGCATGACTATTTTGGATGAACTTCTTCCCATTTCAATCGAGATGGCTAAGAGGAACCTAAGAGGTATCTGGAACTTCACAAATCCTGGTGCAGTGAGCCACAACGAGATTCTCGAGATGTACAGGGATTACATCGATCCAAATTTCAAGTGGCTTAACTTCACACTTGAAGAACAAGCCAAGGTGATAGTTGCTGCCAGAAGCAACAATGAAATGGATGCATCCAAGCTGAAGAATGAGTTTCCAGAATTGCTTTCCATCAAAGAATCACTTATCAAGTATGTCTTTGAGCCCAACAAGAAAAGTGCCTAA 2013 0.4332 MTTHTPKNILITGAAGFIASHVANRLIRKYPDYKIVVLDKLDYCSNLKNLLPSKSAPNFKFVKGDIGSADLVNYLLITEAIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLALQGKVLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVATDLCRLFSKDPETSIKFVENRPFNDQRYFLDDQKLKNLGWAERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPMLVMPGGMEERHFNGSEDEKSASYVTNTNTRMLVPTTKNVGSSQKHPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRVNVAGTLTLADVSREHNLLMINYATGCIFEYDEAHPEGSGIGFKEEDTPNFSGSFYSKTKAMVEELLKDYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWLNFTLEEQAKVIVAARSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKSA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05986 670 FunFam UDP-glucose 4,6-dehydratase 9 210 - -
Vivi2g05986 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 378 658 IPR036291 -
Vivi2g05986 670 Gene3D - 9 313 - -
Vivi2g05986 670 Gene3D - 375 670 - -
Vivi2g05986 670 NCBIfam dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Vivi2g05986 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Vivi2g05986 670 Gene3D - 200 322 - -
Vivi2g05986 670 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Vivi2g05986 670 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Vivi2g05986 670 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 3 337 - -
Vivi2g05986 670 CDD dTDP_HR_like_SDR_e 386 658 - -
Vivi2g05986 670 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 376 670 - -
Vivi2g05986 670 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05986 Vivi-Chr2 191023070 191030468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05986 8 321 Miscellaneous Gene Families AT4G00110 27.679 1.00e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05986 K12450 - gmx:100789909 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05986 2 191023070 191030468 Vivi2g05986 2 191023070 191030468 ECH