Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05666 ATGTCTCGATTCATCTCGAGATGCAAAAAAATGAAGGAAATGGCGCAATTTCCTGGGACCCACATGGTTGTTGAATCAGGTAACTGTCGAACCGGGTTCGGTTTAACAATCCGGTTCAACCGGGTTCGGCCAATTTCAACTCACTTGAATCACATCATTGTAGCCGGAGTTGGTAAACATCGCCGCCGGGAGAATTTAATCGGAGTCCAGGAACGGTACAAGTGGGACCGTGGCGGGTCAGATGATAATGCTCATAACCCGACCCGGAAAATTCGGGCTGAGGCTAATTGTCCTAGGTGTTCTAAAGATATGAACTTGTTCTTTTCCAATCGCCATTTTCCATCCACTAGTGATTCTGATTGTGGTGGTGGTAATGGTGGTGGTGGAGGCGGCGGTTCGGGTGGTGGAGAGAGTGGTTACCAAGCAGTGAATCTATGTCCAAATTGTAAAACAGCATATTATTTTCGTCCTTATAATACATCACCATTACAAGGTACATTTGTGGAGATTGGTAGAGTAACTAATAGTAATAATAATGGTGCTAGTGCTAGTAAATCTCAATTATCTAGGAGGGTAAGAAATGGTGGTGGAAAAGATGGTGGTAGTAATAGTAATAGTATTAAGAATGGTCATGGAGGTGATGAATTTGGTCTTAAAGGTAGTGCTAGTAATTGGCTTGAAGTTTCATTGTGGGATACTTTGAAATCTTACAATGGTAGTGGTGGTGGTAGACATGGTGATGGTAATAATGGGGAGCCGCCGGAGACATGGCCTCCACCGGCAGGTGGTGGTAATGGGAATGGTTTGGCTGTGCATACTCCTCCAGGTCCTCCTTTTGCACCGGGGCTTAATGTTGTTCGGGCTTCGGGGCCGCGGGAAGGTGGCAATGGAGAGAAGGCCTCATGGGGAGGGTCTAATTTGGGGAAGGATTTGCCTACACCAAAGGAGATTTGTAAGGGTCTTGATAAGTTTGTTATTGGACAAGGTAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCAACTCTACCGAAAGGGTTGGGGGCAGACTCAGGAATTTCAGACGTATTTGATGATGACGAAAATGTCGAGCTAGAAAAGAGTAACGTTCTTTTGATGGGTCCAACAGGATCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTTCCATTTGTCATTGCCGATGCAACAACTTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCGATACTACATAAACTACTTGCGGCAGCAGATTACAATGTTGCAGCAGCTCAACAAGGAATAATTTACATCGATGAAGTTGACAAGATAACAAAGAAGGCCGAGAGCTTAAATATCAGCCGAGATGTTTCCGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTCGAAGGAACTATAGTAAATGTTCCGGAGAAAGGAGCCAGGAAACATCCACGGGGCGATAACATTCAGATAGACACAAAGAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTCGAAAAAACGATTTCAGAGAGACGACAAGATTCTTCCATTGGCTTTGGAGCACCCGTTCGTGCCAACATGAGAACCGGCAGAATAATAGATTCTTCAATAGCATCATCTTTACTTGCAACGGTGGAGAGTTCGGATCTGATTGCATATGGACTCATACCAGAGTTTATCGGACGATTCCCCATCTTAGTTAGCTTGTCAGCCTTAACCGAAGAGCAACTTATGCAGATCCTCGTAGAACCAAAACATGCACTTGGTAAACAATACAAGAAATTAGTCAGCATGAATAATGTAAAGCTACACTTCACCGAGAAAGCTCTTAAACTCATAGCAAAGAAAGCAATGGCCAAAAATACCGGTGCCAGGGGTTTAAGAGCCTTAATAGAAAACATTTTAACCGACGCCATGTTTGAGATTCCGGATATTAAGACAGGAAGCGACCGCGTTGACGCTGTAGTTGTTGATGAAGAATCAGTAGGATCACTAACGGCTCCTGGATGTGGCGGGAAAATTCTCCGCGGAGATGGTGCTTTGGAGAAGTACCTAGCTAAGACAAAGGATTCAGAGGCGAATGATGAAGAATCAGAGTTTCAAGAGAGAGATTCAGATATTTCATCGAGAGCGATGAGCATGTAA 2184 0.4364 MSRFISRCKKMKEMAQFPGTHMVVESGNCRTGFGLTIRFNRVRPISTHLNHIIVAGVGKHRRRENLIGVQERYKWDRGGSDDNAHNPTRKIRAEANCPRCSKDMNLFFSNRHFPSTSDSDCGGGNGGGGGGGSGGGESGYQAVNLCPNCKTAYYFRPYNTSPLQGTFVEIGRVTNSNNNGASASKSQLSRRVRNGGGKDGGSNSNSIKNGHGGDEFGLKGSASNWLEVSLWDTLKSYNGSGGGRHGDGNNGEPPETWPPPAGGGNGNGLAVHTPPGPPFAPGLNVVRASGPREGGNGEKASWGGSNLGKDLPTPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHATLPKGLGADSGISDVFDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILHKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGRIIDSSIASSLLATVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQILVEPKHALGKQYKKLVSMNNVKLHFTEKALKLIAKKAMAKNTGARGLRALIENILTDAMFEIPDIKTGSDRVDAVVVDEESVGSLTAPGCGGKILRGDGALEKYLAKTKDSEANDEESEFQERDSDISSRAMSM 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05666 727 SMART ClpB_D2_small_2 585 675 IPR019489 -
Vivi2g05666 727 MobiDBLite consensus disorder prediction 701 727 - -
Vivi2g05666 727 MobiDBLite consensus disorder prediction 176 191 - -
Vivi2g05666 727 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 93 703 - -
Vivi2g05666 727 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 308 676 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vivi2g05666 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 670 IPR027417 -
Vivi2g05666 727 SMART AAA_5 374 532 IPR003593 GO:0016887
Vivi2g05666 727 Pfam AAA domain (Cdc48 subfamily) 374 578 IPR003959 GO:0005524|GO:0016887
Vivi2g05666 727 Gene3D - 584 684 - -
Vivi2g05666 727 Pfam C-terminal, D2-small domain, of ClpB protein 585 654 IPR019489 -
Vivi2g05666 727 MobiDBLite consensus disorder prediction 176 212 - -
Vivi2g05666 727 CDD RecA-like_ClpX 312 582 - -
Vivi2g05666 727 Gene3D - 305 583 IPR027417 -
Vivi2g05666 727 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 305 583 - -
Vivi2g05666 727 MobiDBLite consensus disorder prediction 241 308 - -
Vivi2g05666 727 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 584 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05666 Vivi-Chr2 184966270 184972204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g05666 378 477 Miscellaneous Gene Families AT3G02450 37.624 2.77e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05666 K03544 - gmx:100805340 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05666 2 184966270 184972204 Vivi2g05666 2 184966270 184972204 ECH