Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05406 ATGTCCTCACTTTCCCTTCTTCTCACCCTCTCGCTTCTTCTAACCACCTCTTTCTCCCATAGCAGCAGGAAAGAACTACGGGACAAAGATGAAAATGTATTCCACCGAAATTCTGTTTATTATTCCAACAGAATTGATCCCTCACGTGTTGTCCAAATCTCCTGGCAACCAAGGCTATTTCTTTACAAAGGCTTTCTCTCACATAACGAGTGTGACTACCTTATGTCTCTGGCTTATTCTGTAAAAGATAAATCATCAGCATATGTTGCCCATTCTCATGAAGATGATATTGTTAAGAGGATTGAAGAAAGACTTTCAGTTTGGACTTTCCTTCCTAAAGAGAACAGCAAGCCTTTACAAATAATGCAATACGGACTTGGGAAAGATAGTCAGAACATGGATTATTTCACAAACAAAACCGATTTGGAATTAACCGGACCTTTGATGGCAACGATTGTTCTATATCTCTCGGATTCTACTCAAGGGGGTCAAATTATCTTTCCCGAATCAGTTATCAAGAGTAGCAGCTGGTTGAATTGTGGAAATACTAGTGACATTCTCCAACCAGTAAAAGGGAATGCAGTTCTGTTTTTCTCTCGTAACCTAAATACATCGCCCGACAGAACTAGCTTCCACGCTCGATGCCCTGTCCTTAAAGGCGATATGTGGTCTGCTGTTAAATTCTTCTATGCAAGATCAGTTAATGGAGAGGAAATCTCAACTACACCAGATGGAGATGAATGTACTGATGAGGATGATAATTGTCCCGCTTGGGCGGCTACGGGAGAATGTCAAGGAAACCCCGTCTTCATGATTGGGTCTCCGGATTACTACGGTACATGTAGGAAAAGCTGTAATGCATGCTCTGATTAG 873 0.4158 MSSLSLLLTLSLLLTTSFSHSSRKELRDKDENVFHRNSVYYSNRIDPSRVVQISWQPRLFLYKGFLSHNECDYLMSLAYSVKDKSSAYVAHSHEDDIVKRIEERLSVWTFLPKENSKPLQIMQYGLGKDSQNMDYFTNKTDLELTGPLMATIVLYLSDSTQGGQIIFPESVIKSSSWLNCGNTSDILQPVKGNAVLFFSRNLNTSPDRTSFHARCPVLKGDMWSAVKFFYARSVNGEEISTTPDGDECTDEDDNCPAWAATGECQGNPVFMIGSPDYYGTCRKSCNACSD 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05406 290 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 37 228 IPR045054 -
Vivi2g05406 290 SMART p4hc 57 230 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vivi2g05406 290 FunFam Probable prolyl 4-hydroxylase 12 49 230 - -
Vivi2g05406 290 Pfam 2OG-Fe(II) oxygenase superfamily 120 230 IPR044862 -
Vivi2g05406 290 ProSiteProfiles ShKT domain profile. 248 288 IPR003582 -
Vivi2g05406 290 SMART ShkT_1 247 289 IPR003582 -
Vivi2g05406 290 Gene3D q2cbj1_9rhob like domain 41 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05406 Vivi-Chr2 178960685 178962492 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05406 K00472 - gmx:100775928 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05406 2 178960685 178962492 Vivi2g05406 2 178960685 178962492 ECH