Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g05268 ATGGCTGAACCTTCCAAGGTTATTCATGTTCGCAATGTTGGTCATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAACCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCTAAAAATCAGGCTCTTCTCCAAATGCAAGAAATTCCTTCTGCAGTTAGTGCTATACAGTTCTATGAAAATGCCCAACCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCTCATCAAGAACTGACGACGGTGGATCAAAATCAAGGACGAGAAGATGAGCCAAATCGAATTCTCTTAGTCACGGTTCATCAAATGCTCTATCCTATAACAGTGGATGTGCTACAACAAGTATTCTCTCCTCATGGATATGTGGAAAAGGTTGTAACATTTCAGAAGTCAGCTGGCTTCCAGGCTCTCATCCAGTATGAAACTCGCCAAAGTGCCATTACTGCCAGAACTGCACTTCAGGGACGCAATATTTATGACGGTTGCTGTCAGCTGGATATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTTACGAACCCAAATCTGCCTACAGAGCAGAAAGGCCGACCTTCACAATCTGGATATGGCGATGCAGGATATGGGGTTCAAGGTTCTGGACCCAGATCAGCTGGATTCTCTCAGATGGGCAATGCTGCGGCTGTTGCAGCTGCTTTTGGGGGAGATTTTCCTCCGGGAATAACTGGAACAAATGACAGGTGTACACTTCTTGTCACTAATCTCAATCCTGATAGAATCGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATCAAAATACTCCGGAATAAACCAGATCATGCACTTGTTCAGATGGGGGATGGTTTCCAAGCTGAGTTGGCAGTATATTTTCTGAAGGGATCAATGCTATTTGGAAAGCGAATGGAGGTGAACTTCTCAAAGCATCCGAACATAACCCAAGGTGCTGATACACATGAATACATAAGCTCAAATCTCAATCGGTTCAACCGAAATGCTGCTAAAAACTATCGCTATTGCTGCTCGCCGACAAGGATCATCCACTTGTCCTCCCTCCCACAAGACATTAATGAAGAGGAGATTGCAAGTCTTCTACAGGAGCATGGAATCATTGTCAACTGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGTCTCTTGTTCAATTCGAGAACGAGGAAGAGGCAACTGAAGCCCTTGTATGCAAGCATGCAACTCCACTTTCTGGCTCTGTGGTTCGCATCTCCTTTTCGCAGTTGCAGAATATATGA 1326 0.4329 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQEIPSAVSAIQFYENAQPSIRGRNVYVQFSSHQELTTVDQNQGREDEPNRILLVTVHQMLYPITVDVLQQVFSPHGYVEKVVTFQKSAGFQALIQYETRQSAITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQSGYGDAGYGVQGSGPRSAGFSQMGNAAAVAAAFGGDFPPGITGTNDRCTLLVTNLNPDRIDEDKLFNLFSIYGNIVRIKILRNKPDHALVQMGDGFQAELAVYFLKGSMLFGKRMEVNFSKHPNITQGADTHEYISSNLNRFNRNAAKNYRYCCSPTRIIHLSSLPQDINEEEIASLLQEHGIIVNCKVFEMNGKKQSLVQFENEEEATEALVCKHATPLSGSVVRISFSQLQNI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g05268 441 Gene3D - 248 344 IPR012677 -
Vivi2g05268 441 SMART rrm1_1 255 324 IPR000504 GO:0003723
Vivi2g05268 441 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vivi2g05268 441 SMART rrm1_1 365 434 IPR000504 GO:0003723
Vivi2g05268 441 SMART rrm1_1 101 170 IPR000504 GO:0003723
Vivi2g05268 441 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 437 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vivi2g05268 441 Pfam RRM-like domain 97 174 IPR021790 -
Vivi2g05268 441 SUPERFAMILY RNA-binding domain, RBD 252 437 IPR035979 GO:0003676
Vivi2g05268 441 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Vivi2g05268 441 CDD RRM1_PTBPH3 6 80 IPR034795 -
Vivi2g05268 441 CDD RRM4_PTBPH3 357 435 - -
Vivi2g05268 441 Gene3D - 1 97 IPR012677 -
Vivi2g05268 441 Gene3D - 346 441 IPR012677 -
Vivi2g05268 441 CDD RRM3_PTBPH3 253 328 IPR034797 -
Vivi2g05268 441 Gene3D - 98 201 IPR012677 -
Vivi2g05268 441 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Vivi2g05268 441 MobiDBLite consensus disorder prediction 185 214 - -
Vivi2g05268 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 438 IPR000504 GO:0003723
Vivi2g05268 441 MobiDBLite consensus disorder prediction 185 205 - -
Vivi2g05268 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Vivi2g05268 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 431 IPR000504 GO:0003723
Vivi2g05268 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vivi2g05268 441 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 419 - -
Vivi2g05268 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 338 - -
Vivi2g05268 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g05268 Vivi-Chr2 176287065 176294195 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g05268 K14948 - gmx:100819672 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05268 2 176287065 176294195 Vivi2g05268 2 176287065 176294195 ECH