Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04335 ATGTCTTCTGGAACGGTAGCGGGGATTCAGGGCCAACCTCTCGAGGTCACGGTGGTTTCGTGCGCGAAATTGAAGGATACTGAATGGATTTCAAGACAAGATCCCTACGTTTGTGTTGAATACGCTTCCACCAAATTCCGAACAAGAACATGCACAGACGGTGGAAAACATCCGGTGTTTCAAGAGAAGTTCGTGGTGCCGTTGATTGAAGGTCTTCGTGAACTCACTGTTGTTGTTTGGAACAGCAATACTGTCACATTCGATGATTTTATAGGCACTGGAAAGGTTCAATTGAACAAGGTTCTGTCTCAAGGGTTTGATGATTCTTCTTGGCCACTTCAAACTAAATCTGGCAGACACGCAGGCGAAATAAAACTTATATTGCATTATGCAAATGCCAAACTAAATCAGCAGAAACTAGGCTCCTCCTCAAGCCATACTCCTATTTCCTATGCGGCGACACCCGCAGGTTCTTCTTACTACCCACAACAGCAGCAGCAGCCATCATACTCTAATTATCACCATCCAACACCTGCTCCTGCTCTTGCTTATCCTCCTCCTCCAGCTTCACATCATTCATCTCCCTATCCACCACCCTCATCCTATCCATCAATGCCATCTCCCTATCCACCACACTCATCATCACCATATCCTCCTCCCCACTCAGCTTATCCACCACACTCATCATCACCATACCCTCCTCCACACTCAGCTTATCCACCACCTTCGGCTTATCCACCATCTTCATACCCTCCACCTGCAACTTATCCTCCACACGGAATGTACCCTCCACCACCATATTGA 804 0.4714 MSSGTVAGIQGQPLEVTVVSCAKLKDTEWISRQDPYVCVEYASTKFRTRTCTDGGKHPVFQEKFVVPLIEGLRELTVVVWNSNTVTFDDFIGTGKVQLNKVLSQGFDDSSWPLQTKSGRHAGEIKLILHYANAKLNQQKLGSSSSHTPISYAATPAGSSYYPQQQQQPSYSNYHHPTPAPALAYPPPPASHHSSPYPPPSSYPSMPSPYPPHSSSPYPPPHSAYPPHSSSPYPPPHSAYPPPSAYPPSSYPPPATYPPHGMYPPPPY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04335 267 PRINTS Proline rich extensin signature 186 198 - -
Vivi2g04335 267 PRINTS Proline rich extensin signature 239 256 - -
Vivi2g04335 267 PRINTS Proline rich extensin signature 220 236 - -
Vivi2g04335 267 PRINTS Proline rich extensin signature 147 159 - -
Vivi2g04335 267 PRINTS Proline rich extensin signature 199 220 - -
Vivi2g04335 267 MobiDBLite consensus disorder prediction 139 247 - -
Vivi2g04335 267 Pfam C2 domain 14 104 IPR000008 -
Vivi2g04335 267 Gene3D C2 domain 12 132 IPR035892 -
Vivi2g04335 267 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 7 266 - -
Vivi2g04335 267 SMART C2_3c 13 110 IPR000008 -
Vivi2g04335 267 MobiDBLite consensus disorder prediction 139 174 - -
Vivi2g04335 267 MobiDBLite consensus disorder prediction 179 247 - -
Vivi2g04335 267 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 131 IPR035892 -
Vivi2g04335 267 CDD C2 14 111 - -
Vivi2g04335 267 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04335 Vivi-Chr2 157255107 157256883 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04335 - - vra:106777522 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04335 2 157255107 157256883 Vivi2g04335 2 157255107 157256883 ECH