Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04319 ATGGCGGTTTCGATGACTACCGGCCTATTCTCTGCATCCACTCTAACCCTCCGCCCACAACTTCATCAGAAATTTGCGCTTCCCACACCACCGTCTTCTCTACGGATGGCTCCGCTCCGAACAGTCACTCATGCCACCGTCTCTCAACCACCCGCCGACGGAAAAATTCGTCGTGGTATAATGAAACCAAAAAAAATCTCCCCCGAGATGCAAGACCTTATCGGACTTCCAGAGGTTTCTCGAACCCAAGCACTCAAGCACATTTGGGCCTACATCAAGGAAAACAATCTTCAGAACCCTGAAAACAAGAAGCTTATTCGGTGTGATGAGAAGCTGAAGAAGGTATTTGCAGGGCGTGATGAAGTTGGTATGCTTGAGATTGCTGGTTTGATTAGTCCTCATTTTCTTAAATGA 414 0.4758 MAVSMTTGLFSASTLTLRPQLHQKFALPTPPSSLRMAPLRTVTHATVSQPPADGKIRRGIMKPKKISPEMQDLIGLPEVSRTQALKHIWAYIKENNLQNPENKKLIRCDEKLKKVFAGRDEVGMLEIAGLISPHFLK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04319 137 SUPERFAMILY SWIB/MDM2 domain 58 137 IPR036885 -
Vivi2g04319 137 CDD SWIB-MDM2_like 65 135 - -
Vivi2g04319 137 SMART swib_2 60 137 IPR019835 -
Vivi2g04319 137 ProSiteProfiles SWIB/MDM2 domain profile. 59 137 IPR003121 -
Vivi2g04319 137 Gene3D SWIB/MDM2 domain 55 137 IPR036885 -
Vivi2g04319 137 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 46 136 - -
Vivi2g04319 137 Pfam SWIB/MDM2 domain 62 135 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04319 Vivi-Chr2 157123371 157124629 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi2g04319 SWIB 8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04319 - - lja:Lj1g3v0050930.1 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04319 2 157123371 157124629 Vivi2g04319 2 157123371 157124629 ECH