Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04274 ATGGCTTCATCTTCTTCTCAACCGGAAGGTTTATCGGAAGAGGATTATGATTTGATCCATGGCTCTGAATCTGGTTGGGTCGATGCTCGAACTTCATGCCCCCATCTCGATTCCCTATCCACTGATCTCACCCACATTCCAACCCCTAATACTCCCTGCAACAGGTGCCAACATCCTAATGAAAACTGGCTGTGTTTGTCGTGTAAAGATGTGCTCTGTGGCCGTTTTGTGAACAGGCATATGCTTCAACATTTTCGGGAAACTAATCATAGTGTGGCCCTCAGTTTCAGTGATCTATCGGTATGGTGCTTCTCGTGCGACGCGTACTTGGATGCTTATGTTATTCAGCAATTGCGCCCTGTTCATGAAATGGCTTATGTGTTGAAATTCGGCGAGCTTCCACCAGTTGGAGCAAGCTAA 420 0.4667 MASSSSQPEGLSEEDYDLIHGSESGWVDARTSCPHLDSLSTDLTHIPTPNTPCNRCQHPNENWLCLSCKDVLCGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAYVIQQLRPVHEMAYVLKFGELPPVGAS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04274 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 134 IPR013083 -
Vivi2g04274 139 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 3 137 - -
Vivi2g04274 139 SMART Zf_UBP_1 52 101 IPR001607 GO:0008270
Vivi2g04274 139 Pfam Zn-finger in ubiquitin-hydrolases and other protein 53 111 IPR001607 GO:0008270
Vivi2g04274 139 SUPERFAMILY RING/U-box 30 123 - -
Vivi2g04274 139 ProSiteProfiles Zinc finger UBP-type profile. 31 132 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04274 Vivi-Chr2 156467367 156468442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04274 - - aprc:113869857 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04274 2 156467367 156468442 Vivi2g04274 2 156467367 156468442 ECH