Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04267 ATGAAAATCCGATCAGTATTCGACGGCGGAGCATTGAGAACCGAATTCGAGAAAATCGGAATCGACCCAAAGTTCGTTCCAATCATATGGAAGCATCTCTTTCTCACTCTCAGAAACACTACCACTGAAATCAATTCCGATTGTAATTGGGAATGGGAGAAACTCGTTCCTTCTTTACCTACTCCCGCCTATTCCTTCCTCCGTTCCAATTTCAAAACCCCTCTCTCTTCCACTCTTCACTCCGTTTTCCACTCTTCCGATAACCTCACTTCGAAACTCCTCATCAAGCTTAATAATGGAGAATTTGTGGAGGCTGTGATAATGAGATATGATACTCGTTTGGGTAAATATGGTGGGAAACCGCGTCTTGGTGGTCTCAGAGCTACTCTGTGTATTTCTTCTCAGGTGGGTTGCAAAATGGGTTGCAGATTCTGTGCAACTGGAAGTATGGGATTCAAAAGTAATCTATCCTCTGGAGAAATTGTGGAGCAATTGGTTCATGCCTCTAGTTTTGCACAAATCCGCAATGTTGTTTTCATGGGAATGGGAGAGCCTCTGAACAACTATTCTGCTGTGGTAGAATCTGTTCGTATCATGACTGGGTCGCCATTTCAGTTGTCATTGAAAAGGATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGATTTGCCTGGTTTGAACTTGGCAGTCTCACTACACGCACCAGCCCAAGACATCCGTTGTCATATAATGCCCGCTGCCCGTGCTTTCCCTTTGGAAAAACTTATGAATTCACTGCAAGAGTATCAAAGGAAAAGTTTGCAGAAAATATTAATTGAATACATAATGCTTGATGGTGTGAATGATGAAGAGCAGCATGCCCACCTATTAGGAAAACTGTTGGAGACATTTGAAGTGGTAGTGAACTTAATACCTTTCAACTCCATTGGTACATTGAGTCAATTCAAACCTACTAGTGAGCAGAAAGTGTTCAACTTTCAGAAAATTTTAAGGGGTACCTATGATATTCGAACAACAGTTCGGAAGCAAATGGGTGAGGACATAAGTGGTGCGTGTGGACAGTTGGTCATTAACGCACCTGATAAGTCTCTTGGAAATGCAGATCCCCTAACGGACATAGAAGATCTTGTAATTTGA 1155 0.4216 MKIRSVFDGGALRTEFEKIGIDPKFVPIIWKHLFLTLRNTTTEINSDCNWEWEKLVPSLPTPAYSFLRSNFKTPLSSTLHSVFHSSDNLTSKLLIKLNNGEFVEAVIMRYDTRLGKYGGKPRLGGLRATLCISSQVGCKMGCRFCATGSMGFKSNLSSGEIVEQLVHASSFAQIRNVVFMGMGEPLNNYSAVVESVRIMTGSPFQLSLKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCHIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNLIPFNSIGTLSQFKPTSEQKVFNFQKILRGTYDIRTTVRKQMGEDISGACGQLVINAPDKSLGNADPLTDIEDLVI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04267 384 ProSiteProfiles Radical SAM core domain profile. 124 353 IPR007197 GO:0003824|GO:0051536
Vivi2g04267 384 SUPERFAMILY Radical SAM enzymes 129 296 - -
Vivi2g04267 384 PIRSF Cfr 46 375 IPR004383 GO:0006364|GO:0008173
Vivi2g04267 384 Gene3D Aldolase class I 78 368 IPR013785 -
Vivi2g04267 384 FunFam 23S rRNA methyltransferase 77 368 - -
Vivi2g04267 384 Pfam 4Fe-4S single cluster domain 137 222 - -
Vivi2g04267 384 SFLD adenosine C2 methyltransferase (RlmN-like) 82 367 IPR004383 GO:0006364|GO:0008173
Vivi2g04267 384 CDD Radical_SAM 137 338 - -
Vivi2g04267 384 Pfam Radical SAM superfamily 133 290 IPR007197 GO:0003824|GO:0051536
Vivi2g04267 384 SFLD methyltransferase (Class A) 82 367 - -
Vivi2g04267 384 PANTHER 23S RRNA METHYLTRANSFERASE 7 367 IPR040072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04267 Vivi-Chr2 156339295 156342418 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04267 - - tpra:123909522 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04267 2 156339295 156342418 Vivi2g04267 2 156339295 156342418 ECH