Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g04266 | ATGGAGGGAAGCGAAGGCAATAGCGATGCTGTATCTCCTCATCCATGGCAGTCTTACAACACTGTATACACCACCGCCAAAGCAGGAATGGAGGGGGTTGACAAGGAGAAAGTAAAAAGGGTAGTGTATGAAATGAGCAAAGGATCCAAGTATTTCCAGAATGAGGAACGGAAGGAAGCTTTTATCAAACAGAAAGTCGACAACATGCGACTTCAATTTGCAAAGCTTTCTCAGTCTGATTTATCTCATTACCAGAAGGTTGCTGAAAGAAGGATTCTTGAGCTAGAAGCTTCGCGTGATCTTTCAAGGATCTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAACCCTACATTAAAGGGAAAACCAATGGCTGTCGGTGGCATGTCTATGTTATCCACCGCCAATTATGAGGCCAGGAAATTTGGGGTTCGTTCTGCCATGCCTGGGTTCATTGCACGGAAGCTATGTCCTGAGTTAATCCTTGTCCCAACAGATTTCAAAAAGTATACACATTACAGTGATTTGACCAGAAAAGTTTTTCAGAGGTACGATCCCAATTTTATTGCTGGTAGCCTGGATGAAGCATACCTCGATATAACTGAAGTTTGCAGAGAAAGGAATGTCAAATGTGAAGAAATTGCTCAAGAACTCAGAGACAGTGTTTATGAAGAGACTGGGCTCACGTGTAGTGCTGGAGTGGCACCGAATCGTTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCCTGGCAGTTATGACTTTCATATCCTCTCTTCCTATCAGAAAGATTGGAGGCATCGGTAAGGTCACCGAACATATTTTGAAAGAAGTTTTTGGAATAAGCACATGTGAGCAGATGCTGGATAAGGGTAGCTACCTGTGTGCTCTTTTTTCTCAGTCAACAGCAGATTTTTTTTACTCGGTGGGTTTAGGTTTGGGAAAGACGGATTCTCCCCAAGCAAGTTTCCGGAAAAGTATCAGCAATGAGAGGACATTTTCTACCACTGCGGATGAAGTGCTGTTGTATAAAAAATTAGCGGAGCTTGCTGAAATGCTGTCCACAGACATGCAAAAAGAGGGTCTGCTTGGGCGAACGTTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGAATAGAGCTGTGACTTTACAAAACTACATCAACTCAAATGAGGATATTCTGAAGCATGCATCAAAATTGCTGAAAGCTGAACTTCCTGTTTCTGTAAGATTAATAGGTCTTAGGGTATCACAGTTTAATGGAGAAAAATGTGGTGCTACACCTGATCCTACTCAGAAGACTATTACCAATTTCATTACTTCAGGAGAAGCCAATAGGAAAAAGAATTCTTTTTCAGATGTTACAGATCACGACTTTATCAGTGATACTGAAACTGATCCTTCCATTGATGTTCGGCACACAAGCCAGCTTGATAGCCGAGATCCTTTTGATGGTAATCATTCATTAGATGTAAATCACCAAAGCTGCACTTTCCGGAAAAATGATGGTGCAGAGAAGGTACAAACTTCTGATAATGATGCTGCAAGTTCTCACCACAGTGGATGCACAGAGCTGCTTGGATCAACTTCATTCCAGGGGCAGTTTGAGGGGAAAAATGTGAATGATGGGTCTAATCTTCAGGAGGAGGATAAACTTGATTCTTGTCAGGAAACAATAATGTCGTGGTTGAATGACTATAAATGTTCACTATGTGGAATAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAACATTCTGATTTCCATTTCGCTGAAAAGCTTCAAAAGGAAGAATCTAGAATTCACCAAACATCTATTCCGATTCAAAGTCAGGATCAAAAGCAACGAACCAATAGACAAAGCAAATCCAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCCGATATATGCCCATTGATTATTTTTTTGTCAAGGAGTAA | 1998 | 0.4104 | MEGSEGNSDAVSPHPWQSYNTVYTTAKAGMEGVDKEKVKRVVYEMSKGSKYFQNEERKEAFIKQKVDNMRLQFAKLSQSDLSHYQKVAERRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGGMSMLSTANYEARKFGVRSAMPGFIARKLCPELILVPTDFKKYTHYSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCRERNVKCEEIAQELRDSVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTEHILKEVFGISTCEQMLDKGSYLCALFSQSTADFFYSVGLGLGKTDSPQASFRKSISNERTFSTTADEVLLYKKLAELAEMLSTDMQKEGLLGRTLTLKLKTASFEVRNRAVTLQNYINSNEDILKHASKLLKAELPVSVRLIGLRVSQFNGEKCGATPDPTQKTITNFITSGEANRKKNSFSDVTDHDFISDTETDPSIDVRHTSQLDSRDPFDGNHSLDVNHQSCTFRKNDGAEKVQTSDNDAASSHHSGCTELLGSTSFQGQFEGKNVNDGSNLQEEDKLDSCQETIMSWLNDYKCSLCGIELPPSFVEERLEHSDFHFAEKLQKEESRIHQTSIPIQSQDQKQRTNRQSKSKKQKLSQKEGRYMPIDYFFVKE | 665 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g04266 | 665 | Gene3D | - | 122 | 170 | - | - | |
| Vivi2g04266 | 665 | Pfam | impB/mucB/samB family | 108 | 252 | IPR001126 | GO:0006281 | |
| Vivi2g04266 | 665 | Gene3D | - | 110 | 260 | IPR043128 | - | |
| Vivi2g04266 | 665 | ProSiteProfiles | Zinc finger UBZ3-type profile. | 580 | 617 | IPR041298 | - | |
| Vivi2g04266 | 665 | FunFam | DNA polymerase kappa | 246 | 334 | - | - | |
| Vivi2g04266 | 665 | MobiDBLite | consensus disorder prediction | 619 | 652 | - | - | |
| Vivi2g04266 | 665 | PANTHER | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER | 16 | 662 | - | - | |
| Vivi2g04266 | 665 | Pfam | impB/mucB/samB family C-terminal domain | 341 | 441 | IPR017961 | GO:0003684|GO:0006281 | |
| Vivi2g04266 | 665 | FunFam | DNA polymerase kappa subunit | 165 | 260 | - | - | |
| Vivi2g04266 | 665 | FunFam | DNA polymerase kappa subunit | 22 | 112 | - | - | |
| Vivi2g04266 | 665 | PIRSF | DNA_pol_eta | 441 | 665 | - | - | |
| Vivi2g04266 | 665 | PIRSF | DNA_pol_eta | 97 | 219 | - | - | |
| Vivi2g04266 | 665 | PIRSF | DNA_pol_eta | 215 | 468 | - | - | |
| Vivi2g04266 | 665 | MobiDBLite | consensus disorder prediction | 621 | 636 | - | - | |
| Vivi2g04266 | 665 | Gene3D | - | 23 | 109 | - | - | |
| Vivi2g04266 | 665 | MobiDBLite | consensus disorder prediction | 519 | 540 | - | - | |
| Vivi2g04266 | 665 | FunFam | DNA polymerase IV | 338 | 445 | - | - | |
| Vivi2g04266 | 665 | MobiDBLite | consensus disorder prediction | 468 | 506 | - | - | |
| Vivi2g04266 | 665 | Pfam | Ubiquitin-Binding Zinc Finger | 584 | 617 | IPR041298 | - | |
| Vivi2g04266 | 665 | MobiDBLite | consensus disorder prediction | 467 | 506 | - | - | |
| Vivi2g04266 | 665 | SUPERFAMILY | Lesion bypass DNA polymerase (Y-family), little finger domain | 341 | 436 | IPR036775 | GO:0003684|GO:0006281 | |
| Vivi2g04266 | 665 | Pfam | IMS family HHH motif | 268 | 298 | IPR024728 | - | |
| Vivi2g04266 | 665 | FunFam | Polymerase (DNA directed) kappa | 115 | 167 | - | - | |
| Vivi2g04266 | 665 | Hamap | DNA polymerase IV [dinB]. | 102 | 456 | IPR022880 | GO:0003887 | |
| Vivi2g04266 | 665 | Gene3D | - | 339 | 443 | IPR036775 | GO:0003684|GO:0006281 | |
| Vivi2g04266 | 665 | CDD | PolY_Pol_IV_kappa | 106 | 438 | IPR022880 | GO:0003887 | |
| Vivi2g04266 | 665 | Gene3D | - | 261 | 334 | - | - | |
| Vivi2g04266 | 665 | SUPERFAMILY | DNA/RNA polymerases | 79 | 333 | IPR043502 | - | |
| Vivi2g04266 | 665 | ProSiteProfiles | UmuC domain profile. | 105 | 285 | IPR001126 | GO:0006281 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g04266 | Vivi-Chr2 | 156311580 | 156328626 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g04266 | K03511 | - | gmx:100816973 | 1073.54 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi2g04266 | 2 | 156311580 | 156328626 | Vivi2g04266 | 2 | 156311580 | 156328626 | ECH |