Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03950 ATGGCGTCTCAAGATTCAAAACCTCCGAATCACGCGTTTCTCAGTATCTGCAAATCTCTTATCGCCGGTGGAGTCGCCGGCGGAGTTTCACGAACAGCTGTGGCGCCTCTAGAGAGATTGAAGATTCTACTGCAAGTTCAGAATCGTCACAATGTGAAATACAATGGAACAGTTCAAGGCTTGAAATATATATGGAAAACGGAGGGTTTTAGGGGATTGTTTAAAGGAAATGGAACCAATTGTGCTCGTATTGTTCCAAATTCAGCAGTCAAGTTCTTTAGTTATGAGCAAGCATCTAAGGGTATTCTAAGTCTCTATCGGTTGCAAACTGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGTCTTGGAGCTGGGGCTTTTGCGGGAATCATTGCAATGTCTGCAACTTATCCTATGGACCTGGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCATCAATACAGAGGGATTTTTAATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCGCAAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCGTATGTGGGTCTAAATTTTTCTGTATATGAATCTCTGAAAGATTGGTTGATTCAAACAAAACCACTTGGAATAGCACAAGACTCGGAGCTAAGTGTGACCTCAAGGCTTGCGTGTGGGGCTGCTGCTGGAACTATCGGCCAGACAGTCGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGTGGGATGGAAAGGCGCTGCTTCCGTTGTCGCTGGTGATGGGAAGGGGAATCTTGAGTATACTGGCATGGTTGATGCATTCAGTAAAACTATAAAGTATGAGGGATTTGGAGCTTTATACAAGGGCTTAGTCCCCAACTCAGTCAAGGTGGTCCCTTCCATTGCCATTGCCTTCGTGGCATACGAAATGGTCAAGGATGTTCTTGGAGTTGAAATGAGAATATCTGATTGA 987 0.4498 MASQDSKPPNHAFLSICKSLIAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILSLYRLQTGNEEAQLTPLLRLGAGAFAGIIAMSATYPMDLVRGRLTVQTEASPHQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIQTKPLGIAQDSELSVTSRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWKGAASVVAGDGKGNLEYTGMVDAFSKTIKYEGFGALYKGLVPNSVKVVPSIAIAFVAYEMVKDVLGVEMRISD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03950 328 Pfam Mitochondrial carrier protein 219 320 IPR018108 -
Vivi2g03950 328 Pfam Mitochondrial carrier protein 117 208 IPR018108 -
Vivi2g03950 328 Pfam Mitochondrial carrier protein 15 101 IPR018108 -
Vivi2g03950 328 PANTHER SOLUTE CARRIER FAMILY 25 16 322 - -
Vivi2g03950 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 319 IPR018108 -
Vivi2g03950 328 FunFam Mitochondrial substrate carrier 12 322 - -
Vivi2g03950 328 Gene3D Mitochondrial carrier domain 11 322 IPR023395 -
Vivi2g03950 328 SUPERFAMILY Mitochondrial carrier 13 315 IPR023395 -
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 132 150 IPR002067 GO:0055085
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Vivi2g03950 328 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vivi2g03950 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 101 IPR018108 -
Vivi2g03950 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 205 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03950 Vivi-Chr2 151864574 151866938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03950 20 323 EF-hand Containing Proteins AT5G51050 39.672 3.11e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03950 K14684 - gmx:100784834 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03950 2 151864574 151866938 Vivi2g03950 2 151864574 151866938 ECH