Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03945 ATGGATGAAGAATTGGTTAATGAGAGACTTCAATTAGAAGTTTCTGAGGATTCACAGCGACAGATTAAAGAGGATTCACCGATAACGGATAGCCGAAAACTTGTAAAATCACAACAACCACTGGAATATAATGTAGTTGAGGCTGTTAGTGAAGCGGCTACGTCGCAGCATGCTTATGCGACGGTTGAGGAATTAACGGTGAAAAGTTACAATGGTTCGAGTTTTGATATTGGTACATCGAATAGTCAAGTGCAAATGTATAATAATCAACAGAAACATTGGCAGAATCTTTATCAGATGACGAATAATTCTGGGAATGGAAATTCATTAAGTGATATTGGGTTGATGAATAGTGGCCAGGCTACATCTAGTGGTTGGGAAGATATTGGATCTACATCTTTTCCTGAGTTATTAGCTAGAAAATCGCATAGTGATGGTCAGAGTAATGTCATTGAACAATTGGGGGCTGGTGAGAGTAAAGAGGGGGTTGGTGATGTTCATCGAGGAATGCGGACGAAAGTATTATCCAAATCAGGGTTTGCTGAGTATTTTATTAAAAATTCATTGAAGAGTAAGGGTGTTGTACATAAAGGTCCGTCTTCGGATCGGTTCTATGTTCAGTCTAAAGAGAAAAATCAGGTAAAGGCTGGCAGTGGTGCAAATCAGAATTGGATTAAGACTAGCATTGGTGCAGATCAGAATCAGATGAAGACCAGCACTGGTATAGATCAGAAACAAATGAAGACTGGTATTGGTGCTCAGTCAAACTCTAATAAATCAGTGAAGTTTCATAGCGATGCTTCTGTGCCTAAGTCTAGCATGACTGAATGTGACGGTGTAACATTGAGAGAATGGTTAAAATCTGGCAAGCGCAGAGCAGGAAAAGTGGAAAGTTTTACTATATTTAGAAAGATAGTGGATTTGGTGGATGACTCTCACTCTCGAGGAATTGCATTGCATAACCTTTGTCCATCTTACTTTAAATTGTTACCTTCAAATCAGGTCATGTACATTGGTTTACCTACTCAGAATCAGATGGCAGACAGTGTTGTAAATCCTGTTGTTAACTTAGATAATTCTTTTATTAGGAAAAGGGTGTCTGAGCAAGTAACATCTTCCTCTATTGCTATGGAGTCCAAGAAACAAAAAATTGATGAGAGTGTGAGGGTTACTGGGAGTGACTTGTGTATTGAGACTGCTAGTCATCATAAAGTTCAAATTCCTACAGTTGGATCACAAGATTATCGAACCGAATATGAGAAAGATAACCAATTTTCTCTGTATAATTTTGGGAGAATGTCTAGCATCCCTTGTGTATCTAATACAGGTGAATTTTCATCCACATCTTTATGTGAAAGATGGGAAAATAAGTGGTACGCGAGTCCTGAGGGAGGTTGCACAACATCATCAAACATCTACTGCCTCGGTGTACTCCTTTTTGAGTTACTTAGTCATTTTGACTCTGAAAAAGCACATATTGCAACAATGTCTGATCTTCATCATAGGATTCTCCCTCCAGCTTTCCTATCAGGAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCTGAACCATCATCACGTCCAACAACAGGGGAAATCCTACAATCCGAAGTGATTAATGGATTACAGGAGCTGTGTAGTGAGGAATTGTCATCATGTATAGACAAAGAAGATGCTGAATCAGAATTATTATTGCATTTTCTCACCTCGTTGAAAGAGCAAAAGCAGAGTGATGCCTCCAAATTGGTTGAACAATTAAAGTGCTTGGAATCAGATATAGAAGAGGCAGAGAGGAGGCATAGCTCAAGAAAATCCTTTGTTCCCTCTGGCCTGCAGAACGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAGAAAGGAACTTTTGAGTGTAGAAATGCTGCCCACAGTATCTCCAATCTCTAATACAACTGAAATGAGATTAATGAGAAACATAGGGCATCTTGAAAGTGCTTACTTTTCCATGCGATCCAAGGTTCAGCTTTCTGAAACAGGTGCCACAGATCACCCAGAGAAAGATATACTAAGAACTCGCGAGAACTTGTGTGTGACACAAAAAGGCGAAGAAAAACATAAAAGTAAAGATGCCTTAGGAACCTTCTTTGATGGTTTGAGCAAATATGCACGTTACAACAAGCTTGAAGTGCGGGGTATGCTAAGAAATGCAGATTTTAACAATCCTGCAAATGTGATATGCTCTCTGAGCTTTGATCGGGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTTTGCAATGATTCTGTCGATATCCATTATCCCGCAGTTGAGATGTCAAACAGATCAAAGCTCAGCTGTGTTTGCTGGAATAACTATATTAAGAATTATCTTGCCTCTACAGACTATGACGGTGTAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAGTACAGTGAACATGAAAAGAGGGCTTGGTCTGTTGACTTCTCTCCAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGAACAATCCGGAATGTTGCTAATGTCTGCTGTGTTCAATTTTCTGCTCATTCCTCTCATTTGCTAGCCTTTGGATCTGCGAATTACTCAACTTACTGTTACGATCTTCGTAATCTTAGAAGTCCCTGGTGTGTATTGGTAGGTCACCGTAAAGCTGTAAGCTATGTCAAATTCTTAGACTCTGAAACACTTGTTTCTGCCTCTACCGATAATTCATTAAAGATCTGGGATCTCAATAAAACCTCTTCGGTTGGTGCATCTACAAGTGCTCGCAGCCTAACACTGTCTGGACATACTAATGAGAAGAATTTTGTGGGTTTGTCGGTTGCTGATGGATACATTGCCTGTGGTTCAGAATCAAATGAGGTTTACACCTACTATAAAACGCTTCCCATGCCAATTACTTCACACAAGTTTGGATCTATTGATCCCATTTCTGGTAAAGAGACTGATGATGACCAAGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAGTCAAACACGCTTCTTGCGGCCAATTCAAGTGGATGTATAAAAGTGTTACAGATGGTTTAA 3156 0.397 MDEELVNERLQLEVSEDSQRQIKEDSPITDSRKLVKSQQPLEYNVVEAVSEAATSQHAYATVEELTVKSYNGSSFDIGTSNSQVQMYNNQQKHWQNLYQMTNNSGNGNSLSDIGLMNSGQATSSGWEDIGSTSFPELLARKSHSDGQSNVIEQLGAGESKEGVGDVHRGMRTKVLSKSGFAEYFIKNSLKSKGVVHKGPSSDRFYVQSKEKNQVKAGSGANQNWIKTSIGADQNQMKTSTGIDQKQMKTGIGAQSNSNKSVKFHSDASVPKSSMTECDGVTLREWLKSGKRRAGKVESFTIFRKIVDLVDDSHSRGIALHNLCPSYFKLLPSNQVMYIGLPTQNQMADSVVNPVVNLDNSFIRKRVSEQVTSSSIAMESKKQKIDESVRVTGSDLCIETASHHKVQIPTVGSQDYRTEYEKDNQFSLYNFGRMSSIPCVSNTGEFSSTSLCERWENKWYASPEGGCTTSSNIYCLGVLLFELLSHFDSEKAHIATMSDLHHRILPPAFLSGNPKEAGFCLWLLHPEPSSRPTTGEILQSEVINGLQELCSEELSSCIDKEDAESELLLHFLTSLKEQKQSDASKLVEQLKCLESDIEEAERRHSSRKSFVPSGLQNDYSCQKEIMPLRKELLSVEMLPTVSPISNTTEMRLMRNIGHLESAYFSMRSKVQLSETGATDHPEKDILRTRENLCVTQKGEEKHKSKDALGTFFDGLSKYARYNKLEVRGMLRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFDFNTLCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGVVKLWDASTGQEFSQYSEHEKRAWSVDFSPVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSANYSTYCYDLRNLRSPWCVLVGHRKAVSYVKFLDSETLVSASTDNSLKIWDLNKTSSVGASTSARSLTLSGHTNEKNFVGLSVADGYIACGSESNEVYTYYKTLPMPITSHKFGSIDPISGKETDDDQGQFVSSVCWRGKSNTLLAANSSGCIKVLQMV 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03945 1051 PRINTS G protein beta WD-40 repeat signature 846 860 IPR020472 -
Vivi2g03945 1051 PRINTS G protein beta WD-40 repeat signature 930 944 IPR020472 -
Vivi2g03945 1051 PRINTS G protein beta WD-40 repeat signature 803 817 IPR020472 -
Vivi2g03945 1051 Coils Coil 575 602 - -
Vivi2g03945 1051 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 945 - -
Vivi2g03945 1051 Pfam WD domain, G-beta repeat 821 859 IPR001680 GO:0005515
Vivi2g03945 1051 Pfam WD domain, G-beta repeat 911 943 IPR001680 GO:0005515
Vivi2g03945 1051 MobiDBLite consensus disorder prediction 1 29 - -
Vivi2g03945 1051 Gene3D Transferase(Phosphotransferase) domain 1 277 551 - -
Vivi2g03945 1051 MobiDBLite consensus disorder prediction 7 29 - -
Vivi2g03945 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 826 868 IPR001680 GO:0005515
Vivi2g03945 1051 ProSitePatterns Trp-Asp (WD) repeats signature. 930 944 IPR019775 -
Vivi2g03945 1051 Gene3D - 710 1051 IPR015943 GO:0005515
Vivi2g03945 1051 SMART WD40_4 819 859 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 905 943 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 1001 1049 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 776 816 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 954 993 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 862 901 IPR001680 GO:0005515
Vivi2g03945 1051 SMART WD40_4 727 766 IPR001680 GO:0005515
Vivi2g03945 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 825 IPR001680 GO:0005515
Vivi2g03945 1051 SUPERFAMILY WD40 repeat-like 734 1048 IPR036322 GO:0005515
Vivi2g03945 1051 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 709 1051 - -
Vivi2g03945 1051 PANTHER PROTEIN SPA1-RELATED 2 33 1051 IPR044630 GO:0009640
Vivi2g03945 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 952 IPR001680 GO:0005515
Vivi2g03945 1051 ProSitePatterns Trp-Asp (WD) repeats signature. 803 817 IPR019775 -
Vivi2g03945 1051 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 826 861 - -
Vivi2g03945 1051 SUPERFAMILY Protein kinase-like (PK-like) 274 549 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03945 Vivi-Chr2 151760746 151769376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03945 803 961 Miscellaneous Gene Families AT5G08390 26.061 2.73e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03945 K16240 - gmx:100778303 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03945 2 151760746 151769376 Vivi2g03945 2 151760746 151769376 ECH