Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03801 ATGCGGAGTGCAAGGTTACCAGATTCGATGGATGAAGAAGACCTTGCAACAGAGCACAAAGTGCCATCTGGTCTCATAAAAGCGATAAAGTTTGATGTTTTAAGCGGGGAAGATATAGAGAAGATCTCTTCTTTGGAGATAAATGCGCCCGGGCAGGTCACTTGTTCTGATTTGGGACTTCCAAATTCGTCTTATGGGTGCACGACATGTGGTTCAAAAGATAGAAAGTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGAAAAAAATTTGCCCTGCATGTAAATCTATTCGACATGAATTACGGATCAAGCGTCATAAATCACTCCTTGGAATCAATAATCAGCCCAAAGGTTGCAAATATTGTTCTGGAAATGGTATGGGCCGTTATCCCGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTGGAAGTAAATGATGCATCTTTAAACAAGAAAAGAAATTTGGGGCGAGGACTGCCTGCTGATTATTGGGATTTTATTCTTGGAGATGCTCAACCAGAAGAAAATCATGTAAATAGGAGGGTTTTATCACCCGTTCAGGTTGAGCAATTATTAAGTGGTGTTGATTCAAACTTCATTGAAAAGTATATACCAAGCATGGATTTGGTTGGTCTCAGTTGCTTCCTGGTGGCACCAAATTGTCATCGTGTCACGGAAGTCCCTCATCGACTTTCTGGGGGATATCCATTGAGTTTTGATAACAGGACCAGAGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAGTTAAGTTCTCGTGTTTTGGATTGCTTGCGGTTTTCCAAGATAAATCCTGATAGAACACCAATTAATGTTTTTACTGAGTTGCAACAAAGAAAGGTTGGAGAAAATGCTTGCAATTCTTCTGGCTTAAGATGGATGAAAGATGTAGTTCTTGGAAAACGCAATGACAGTACATTCCGAACTGTGGTTGTTGGTGATCCAGACCTCGAGATAAGTGAAATTGGTATACCCTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTACGTAAATAGGCAGAATAAGCAAAATTTGCTTTACTGTTGTGAGCTGCGTTTACTAGAGAAGGGGCATATAAATGTTCGCAGAAAGGGTAAACCAGTGGTTCTGTATAAAAAAGAAGATTTGCAGATAGGAGACGTAATTTACCGGCCTCTTGTTGATGGGGATATAGTGTTGATAAATAGACCTCCTTCCATACATCAACATTCTATGATTGCTCTCACGGTTAGGGTTCTTCCAATACCTTCTGTAGTATCTATTAACCCAATCTGTTGCTCACCTCTGAAGGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCTGTTGCTGCTAGAGTGGAGCTTAACGAGTTGGTTGCTTTGGATAAGCAATTGATTAATGGGCAGAGTGGTACAAATCTGCTTTCGCTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGCAAGATGGGGTCCTTTTGAATGTTTACCAAATCCAGCAACTTCAAATGCTTTGCAATAGAAAATTAACACCCCCTGCAATTGTAAAGGCTCCTTCAAGTAATACCTCATTTTGGAGTGGCAAGCAATTGGTCAGCATGCTCTTGCCTTCTAATTTTGACTACGCTTTTCCTTCAAATGATGTTTTTGTTAGTGATGGGGAGCTGATATCTTGTTCGGAGGCTTCTGGGTGGTTACGCGATTCAGAGAACAATGTTTTCCAAAGTCTTGTGGAAAATTTTCAAGGGGAGACTCTGGATATTTTGCATGGTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACTGGGTTTAGTGTTTCCCTTTCAGATTTGTACCTTTCTTCTGATACCTATGCGCGTAAAAACATGATGGAGGAAATCTCATATGGATTACGAGAAGCCGAACAGGCTTGTGATTTCAACCAGTTATTGGTAAATCATTTTTGTGATTTTCTTTCAGGAAGTCTAGCAGATAGTGAAAATGATATGACTGTTGACGTGGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTAAGTCAAGCGTCAGTTGATGCTTTTAAACAGGTTTTTCGCAATATTCAAAGTTTAGCTGATAAACACGCGTGCAAGGAAAATACTTTCCTTGCTATGTTTAAGGCTGGAAGTAAGGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTTGGACTTCAACATTCCCTGGTTCGCTTGTCATACAGAATTCCACGGGAACTCACATGTGCTGGTTGGAACAGTCATAAGGGGCTTCATTCAACAGAAATGTTTTCTGAACCAGGCCAATCTTACATTGCTCATGCTGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAACCCACTTGAATGTTTTGTTCATTCAGTGACGAATCGTGACAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCCGTAGACTTATGTTCTTCATGCGTGATATGTACGATGCATATGATGGATCTGTGAGAAACTTATATGGGAATCAACTTATTCAGTTTTCTTATGATGCTGAAGAGGATTTGTCTTGTGATAGCAATTTTCGAGAGGATATTATAGGCGGTGAACCAGTCGGAGCGCTTTCTGCTTGTGCGTTTTCTGAGGCTGCTTACAGTGCTTTGAGTCAGCCTATTAGTCTACTTGAAGCATCACCTTTGCTGAATTTAAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAAGTGGTGATCAGACAGTGTCTTTATTTTTGTCTGAGAAAATTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCACTGGAAGTTAAGAATTATTTGGAAAGATTAATGTTCTCAAACGTTGTTTCTACTGTCATGATAATATTCACTCCACAGTCTTGCAATTTAGAAAAACACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAAATTTAACAAGAAGAAATTTAGAAGTGCATTCTATCATTGACTCCCTTTACCAGAGATATGACTCCTTCAGAAAAGATTCAAAATTCACTCTTCCCAATATGAAAATATCAAGCAAGAAATATTGTATAGATTGCATGGCTAAGGAAGGTGGAGAAACCTCTGTTTATAAAAAAAAAGACAGTGAAGATTGCATCACCGTCACACTTGTCGAAGACTCTAAGAATGCTGAACAGCTGGATGCTATTCGAAATGTTCTGATTCCTTTACTTTTGCAAACAGCTATAAAAGGATTTTTGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTTCCAAAAGTATCGAAATCTTATGGTTCTTCTGGTGAACTATACTTGAAGGTTACCATGGCCACTGACAATGACAGTGGTGCATTCTGGGGTTCACTGATAAACCATTGTCACAGAATAATGCCGTTAATTGACTGGACACGAAGTCATCCTGATAACATTCATCATTTCTGCTCAGCCTTTGGAATCGATGCAGGATGGCAGCAATATCTCCATAATTTGTCGTCTGCAACATCTGACACTGGCAAGTCAATCCTTCCTAAGCATCTGCGCCTTGTTGCCAATAGTCTTTCATCTTGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCGCGGCAAAGAAAACATGCAGCTGTTTCATCACCCTTCGTGCAAGCATGCTTTTCAAATCCCGGCACTTCCTTTTTAAAAGCTGCAAAGTCTGGAGTCGTAGATGATCTCCAGGGCAGCCTGGATGCATTGGCTTGGGGAAATTGTCTCCCCATGGGGACAGGTGGGCAGTTTGATATTATATACTCAGAGAAGGTACAAGAAATTGATAAGCCTGTAGATGTATATGGTCTGCTAGAAACCAGTTTTAGCAAGCTTGAACAAGAGACTGTTATCCCTCAATCTCACAAATATTCGTCCAGAAATTGCAATTCAGAGTTTAGGCATAAAAATGGTGGTTACGCTCCAAAAGAGTCTAAGTGGAAGGGTGCTATAAGAAATAACATTACTGCAAATGATATTCAGAAGCTTACTACTGCATCAAGGTTCATACTGAACAAGTATCTGGTTGATGAGATACTAGGTGAGAGAGACAAGTCAACAATAATGAGGGTTTTGCATTTTCATCCTCGTAAAAATGAGAAGCTTGGCTCCGGACTACAAGACATAAAGGTTGGATGGCATCCCAAGTTTACAGATAGCCGATGTTTTTTTATAATACGAACGGATGGGACTGTTGAAGATTTTTCATACCGCAAATGCGTTATTGCTGCTCTTGATATTATTGATCCAGAAAAGTCAAAGATCCAAAAGAAAAAATGGTCAGAAAATGATGACATAGGAACAAAAAAATGGTCACGAAATGATGACAAGGAAGCTAAAAAAAGATCTGAAAACTATGACAATGGAGTAAGGAAATGGTCAGAAAGTTATGACCTAAAAACTAAAAAATGGTGGAGAAGTGATGACTTGGAAGATAAAAAATGGTCGAGAAATTATGACATCGAAGCTAAAAAGTTAAAAACAGTTGAAGGATAA 4620 0.3959 MRSARLPDSMDEEDLATEHKVPSGLIKAIKFDVLSGEDIEKISSLEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILKKICPACKSIRHELRIKRHKSLLGINNQPKGCKYCSGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDASLNKKRNLGRGLPADYWDFILGDAQPEENHVNRRVLSPVQVEQLLSGVDSNFIEKYIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPINVFTELQQRKVGENACNSSGLRWMKDVVLGKRNDSTFRTVVVGDPDLEISEIGIPCQIAEGLQVSEYVNRQNKQNLLYCCELRLLEKGHINVRRKGKPVVLYKKEDLQIGDVIYRPLVDGDIVLINRPPSIHQHSMIALTVRVLPIPSVVSINPICCSPLKGDFDGDCLHGYIPQSVAARVELNELVALDKQLINGQSGTNLLSLSQDSLTAAYLLLQDGVLLNVYQIQQLQMLCNRKLTPPAIVKAPSSNTSFWSGKQLVSMLLPSNFDYAFPSNDVFVSDGELISCSEASGWLRDSENNVFQSLVENFQGETLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDTYARKNMMEEISYGLREAEQACDFNQLLVNHFCDFLSGSLADSENDMTVDVDRLNYERQISAALSQASVDAFKQVFRNIQSLADKHACKENTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELTCAGWNSHKGLHSTEMFSEPGQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGSVRNLYGNQLIQFSYDAEEDLSCDSNFREDIIGGEPVGALSACAFSEAAYSALSQPISLLEASPLLNLKNVLECGSRKRSGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSNVVSTVMIIFTPQSCNLEKHSPWVCHFHLDKENLTRRNLEVHSIIDSLYQRYDSFRKDSKFTLPNMKISSKKYCIDCMAKEGGETSVYKKKDSEDCITVTLVEDSKNAEQLDAIRNVLIPLLLQTAIKGFLEIKKVDILWKDLPKVSKSYGSSGELYLKVTMATDNDSGAFWGSLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQQYLHNLSSATSDTGKSILPKHLRLVANSLSSCGEFVGLNAKGMARQRKHAAVSSPFVQACFSNPGTSFLKAAKSGVVDDLQGSLDALAWGNCLPMGTGGQFDIIYSEKVQEIDKPVDVYGLLETSFSKLEQETVIPQSHKYSSRNCNSEFRHKNGGYAPKESKWKGAIRNNITANDIQKLTTASRFILNKYLVDEILGERDKSTIMRVLHFHPRKNEKLGSGLQDIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCVIAALDIIDPEKSKIQKKKWSENDDIGTKKWSRNDDKEAKKRSENYDNGVRKWSESYDLKTKKWWRSDDLEDKKWSRNYDIEAKKLKTVEG 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03801 1539 Pfam RNA polymerase Rpb1, domain 2 334 491 IPR000722 GO:0003677|GO:0003899|GO:0006351
Vivi2g03801 1539 Pfam RNA polymerase Rpb1, domain 3 497 645 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vivi2g03801 1539 Gene3D - 649 820 IPR038120 -
Vivi2g03801 1539 Pfam Protein of unknown function (DUF3223) 1378 1449 - -
Vivi2g03801 1539 SMART rpolaneu7 233 521 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vivi2g03801 1539 MobiDBLite consensus disorder prediction 1474 1493 - -
Vivi2g03801 1539 Gene3D RNA polymerase Rpb1, domain 3 501 647 IPR042102 -
Vivi2g03801 1539 Gene3D RNA polymerase ii 367 419 - -
Vivi2g03801 1539 Gene3D - 1360 1451 - -
Vivi2g03801 1539 FunFam DNA-directed RNA polymerase subunit 501 639 - -
Vivi2g03801 1539 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 21 1296 - -
Vivi2g03801 1539 Pfam RNA polymerase Rpb1, domain 4 714 772 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vivi2g03801 1539 PANTHER DNA-DIRECTED RNA POLYMERASE 30 1295 IPR045867 GO:0003899|GO:0006351
Vivi2g03801 1539 Gene3D - 330 500 - -
Vivi2g03801 1539 CDD RNAP_IV_RPD1_N 34 867 IPR040403 -
Vivi2g03801 1539 Gene3D RNA polymerase II, clamp domain 16 132 IPR044893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03801 Vivi-Chr2 149379730 149395873 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03801 K16250 - gmx:100796185 2144.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03801 2 149379730 149395873 Vivi2g03801 2 149379730 149395873 ECH