Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03612 ATGGACTCACAGCAGAACAACCTATTTGACACGGCTTCGCAGCCTGACACAGGTAACGATGCTTACACGTTTCTCGAATTCAACACTCAAGGCGAGGATTTCGATTATCCAGAGTTCCGTGACCCGATTAGGTCACCGGTAGCATGGCCTACGCCCTCCGATTCACTCGCTGACCCGTCGGAAAGAGGCGGTGCCGGTTCGGATCACCAGTCAGATGCCTCCCCGGTTTCGGCTGCTCCTGGAAGCGCGACGAAAGGTAGGTCGGGTAGCGGGAGTGGAAGCAGCAGCCAGATGGTGGATTCGCTTGCTGCCGGGATGAGCGGGTTGAATTTTGAGGATACCGGTGATGATGATAATTATGAGTTTGGTAAAGGGGATTTCACTGAACATGCTTGCCGTTATTGTGGGGTGTCTAATCCAGCTTGTGTCGTTAGGTGTAATGTACCTTCGTGTCGCAAATGGTTCTGTAATTCCAGGGGAAACACTTCTGGATCGCACATCGTTAATCACCTCGTTCGGGCAAAGCACAAGGAAGTCTGTCTGCACAAAGATAGTCCACTGGGAGAGACAATTCTTGAATGCTACAACTGTGGGTGCCGTAATGTGTTTCTCCTTGGATTTATATCTGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGGGAACCTTGCTTGAGTGTCAATGCTTTGAAGGATATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATTCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAATTGTGGAAGACAAACCCTGATGCTTCGTTTGAGGACCTTGAGAAGCCTGGTGTAGACGATGAGCCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTCATCAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGTAAGGACAACGTTACAATTCGATGGGATATTGGTCTCAATAAGAAGCGTGTTGCATATTTTGTATTTCCAAAGGAAGATAATGAGTTACGGCTTGTACCTGGTGATGAGCTACGTTTGCGTTATTCTGGTGATGCTGCACATCCTTCTTGGCAGTCAGTTGGTCATGTGATTAAGCTAACTGCACAAGAAGAGGTTGCGTTGGAACTTCGGGCTAGCCAGGGAGTTCCAGTTGATGTCAACCATGGTTTTAGTGTTGATTTTGTCTGGAAAAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCTGTTGACGAGACAAGTGTCAGCGGGTATATATATCACCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCACGTCGCTTTGGTGCTCCAGGGCTTCCAGAACTGAATGCATCTCAAGTGTTTGCTGTCAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAAACTGTAACATCTGCAGCACTTGTATATCACATGGCCAAACAAGGACAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCCGTGGATCAGTTGGCTGAAAAAATAAGTGCTACTGGATTGAAGGTTGTGAGGCTTTGTGCGAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGATAAGAGTGAACTTCACAAGTTACAACAGCTGAAGGATGAACAAGGAGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGGGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATTTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGATTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAGTGTCTCATTCCTTTGGTTCTTGGAGCGAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGAATGCATCCATGCCTTTCTGAATTTCCCTCTAACAGTTTTTATGAAGGCACCCTACAAAATGGTGTTACTGTTAATGAGAGGCAATCCACAGGAATTGATTTTCCATGGCCTGTACCAAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTGAATAGGACAGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTTTTAAAAAGTGGCGTGGTTCCAAGTCAGATCGGTGTCATAACACCTTATGAGGGGCAAAGAGCTTATATCGTAAACTATATGTCAAGAAATGGCGCTCTTAGGCAGCAACTGTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTATATCATTCTATCATGTGTTAGAAGTAATGAACATCAGGGAATCGGATTCCTGAATGACCCTAGGAGGCTCAATGTTGCTCTGACACGAGCTAGATATGGTATTGTTATACTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTGTGGAATGGTTTACTGACTCACTATAAGGAACATGAATGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGATTTATAATGAACGTAGACTTTTTTATGGGGGCGGACCTGGAGTTGCTGCTAATGATAATTTTGGTTCTGGTGCTGGCACAAGTTCAGACCGGAGAAGTGGCCGAGGAAGGGGATCTTATATACCCTCTGGTCCACCAAATGGAAATCACAAACCTGGACTGCATCCTGCTGGATTTCCTGTGCAAAGGGTTCCATTGCCTCCTTACCATGGTGGTCCCCAATCTCAACCATATGCCATTCCCTCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCAGCTCCAGGGAGCCGTGGTTTTGGGGCCGGGAGAGGTAATTCCGGTGCTCCAATTGGAAATCATCTTCCACACCCACAAGGCACACAACAGCCTATTGGGAATCTGGGATCCGCATTTAATTTCCCTGCATTAGAGAACCCTAACAGCCAGCCATCTGTTGGTGGCCCATTGTCTCAACCCGGCTTTGCTAATAATATGCCGGTCCAAGGGGCGGGGCAGTCATTCCGAGATCAATTTTCTGTTCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAGAGCCAAGGATCTCATGTTCCTTATAATGTAACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGACTATGCAACACAAGGAGCACAAGGTGGATTCCCGGGCAACTTTCTTAACCAAAATTCTCAAGCTGGATATTCACGCTTTGGTTCCGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCTCAGGGCCTTTTCACTCAAGTGGGGTTCAGTGATCCCTTGCAAGATGATGCAACACAGAACCATTTCAATGTGGCTAATTCTAACCCACTTCAATCACAGATGAATTCTCTCTACTCCCAGCCATTTGCCCATTACAACACACAGCCACTGAACATGCAAGCTTCTCAGCCACAGCCTCAGGGTCAGAGCTCCCAGAATCAAAAAATTCACTACAACAGTTGA 3786 0.454 MDSQQNNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGAGSDHQSDASPVSAAPGSATKGRSGSGSGSSSQMVDSLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAANDNFGSGAGTSSDRRSGRGRGSYIPSGPPNGNHKPGLHPAGFPVQRVPLPPYHGGPQSQPYAIPSRGAVHGPVGAVPHVPAPGSRGFGAGRGNSGAPIGNHLPHPQGTQQPIGNLGSAFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQNHFNVANSNPLQSQMNSLYSQPFAHYNTQPLNMQASQPQPQGQSSQNQKIHYNS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03612 1261 MobiDBLite consensus disorder prediction 70 99 - -
Vivi2g03612 1261 PANTHER DNA2/NAM7 HELICASE FAMILY 239 969 IPR045055 -
Vivi2g03612 1261 FunFam Regulator of nonsense transcripts 1 715 926 - -
Vivi2g03612 1261 Pfam AAA domain 693 888 IPR041679 -
Vivi2g03612 1261 MobiDBLite consensus disorder prediction 948 1010 - -
Vivi2g03612 1261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 489 621 IPR014001 -
Vivi2g03612 1261 Pfam AAA domain 580 683 IPR041677 GO:0004386
Vivi2g03612 1261 Pfam RNA helicase UPF1, 1B domain 335 424 IPR040812 -
Vivi2g03612 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 939 IPR027417 -
Vivi2g03612 1261 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 124 283 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vivi2g03612 1261 MobiDBLite consensus disorder prediction 1 26 - -
Vivi2g03612 1261 CDD ZBD_UPF1-like 131 253 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vivi2g03612 1261 MobiDBLite consensus disorder prediction 1233 1261 - -
Vivi2g03612 1261 CDD DEXXQc_UPF1 480 715 - -
Vivi2g03612 1261 Gene3D - 566 618 - -
Vivi2g03612 1261 CDD 1B_UPF1-like 336 423 IPR040812 -
Vivi2g03612 1261 Gene3D - 715 926 IPR027417 -
Vivi2g03612 1261 FunFam regulator of nonsense transcripts 1 homolog 336 424 - -
Vivi2g03612 1261 Gene3D - 444 714 IPR027417 -
Vivi2g03612 1261 Pfam Type III restriction enzyme, res subunit 486 548 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi2g03612 1261 Pfam RNA helicase (UPF2 interacting domain) 130 283 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vivi2g03612 1261 CDD SF1_C_Upf1 716 905 IPR047187 -
Vivi2g03612 1261 Gene3D - 336 424 - -
Vivi2g03612 1261 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03612 Vivi-Chr2 144868668 144880782 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03612 K14326 - gmx:100795594 2427.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03612 2 144868668 144880782 Vivi2g03612 2 144868668 144880782 ECH