Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03197 ATGACAGGTTCATCAAAAAATGGACGCGACGGAAGCAGCACTCGCGGTAGAAGATACGGAAAATTAAAAAAGAACGACGATGAATTTGACGGATACAACTCCGAGAATCATCCAAGAAAAAATAGCCCAGTTATCACTATCGACGCTCCTCATTTGGATCCTGTCATGGCAGCCGATAACTCTCCATATGATGCTACTCTTTCCCCATTATCGAAATCACCTTGGTCCTCTCATCTCAACGAAGAAGCTGCATCTTCTAGCGAAGATGCTCTTGTTGGTTCATTAGTCCGCGAGGAAGGTCACATTTACTCCCTCGCGGCAACTAAGGATTTATTATACACCGGTTCCGATAGCAAAAACATTCGTGTTTGGAAGAATCAAAAGGAATTCGCGGGGTTTAAATCAAACAGCGGTTTAGTTAAAGCAATTGTTATTGCCGGTGAGAAGATTCTCACCGGCCATCAAGACGGAAGAATCCGTGTATGGAAAGTCTCCGGGAAGAACGAACGGGTTCACAGAAGAGTCGCAACATTGCCGACGCTAAGAAATTATATAAAATGTTCAATGAAACCAAGCAACTACGTCGAAGTTAAAAAACATCGCAACATGTTATGGATTAAACATTATGACGCGATCTCATGTCTAAGTTTAACGGAAGATAATTCGTTAATTTACTCGGCTTCATGGGATAAAACGTTTAAAGTATGGCGTTCTTCGAATTACAAATGTTTGGAATCAGTGACGGCTCATGACGACGCGGTTAACGCGCTTGTCGTCGGATTCGACGTTTTGGTTTTCACCGGCTCAGCCGACGGTACAGTTAAAATGTGGCGACGAGAAATGCAAGGAAAAGCGACGAAGCATTTTTTTTCACAGACGTTGTTGAAACAAGAATGTGCGGTGACAGCTTTAGCGTTGAATTCAGAAGGGACATTTTTATACGCGGGTTCTTCGGATGGGTTGGTTAATTATTGGGTGAGGGAAACAAATTTAGAACACAGTGGAGTTTTGAGGGGACATAAATTGGCGGTTTTGTGTTTAGCGACGGCTGGGAGTTTGTTATTTAGTGGTTCTGCTGATATGGCGATATGTGTATGGAAAAGGTCCATGAGTAATGAACATGGTTGTATGTCGGTGTTGTCAGGACATAGCGGACCAGTGAAGTGTCTTGCCGCCGAGAAGGATCCAGATGCAATGTTGAATGAGAGAAGATGGATTTTGTATAGTGGGAGTTTGGATAAGTCTGTTAAGGTTTGGAAGGTTAACGAAAGTGCGGCGGCACCTGGTCAACAAAATAATCATCCGCAACTACCTCGTGCTAGTGTTAGCGGCGAGTTTCCTAGAGTGTCGTCGTTGAGGAAAATGGGGTCGCGAAGATATTGA 1383 0.4367 MTGSSKNGRDGSSTRGRRYGKLKKNDDEFDGYNSENHPRKNSPVITIDAPHLDPVMAADNSPYDATLSPLSKSPWSSHLNEEAASSSEDALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNERVHRRVATLPTLRNYIKCSMKPSNYVEVKKHRNMLWIKHYDAISCLSLTEDNSLIYSASWDKTFKVWRSSNYKCLESVTAHDDAVNALVVGFDVLVFTGSADGTVKMWRREMQGKATKHFFSQTLLKQECAVTALALNSEGTFLYAGSSDGLVNYWVRETNLEHSGVLRGHKLAVLCLATAGSLLFSGSADMAICVWKRSMSNEHGCMSVLSGHSGPVKCLAAEKDPDAMLNERRWILYSGSLDKSVKVWKVNESAAAPGQQNNHPQLPRASVSGEFPRVSSLRKMGSRRY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03197 460 MobiDBLite consensus disorder prediction 425 460 - -
Vivi2g03197 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Vivi2g03197 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 367 IPR001680 GO:0005515
Vivi2g03197 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 236 - -
Vivi2g03197 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 325 IPR001680 GO:0005515
Vivi2g03197 460 MobiDBLite consensus disorder prediction 11 35 - -
Vivi2g03197 460 Gene3D - 58 188 IPR015943 GO:0005515
Vivi2g03197 460 MobiDBLite consensus disorder prediction 1 46 - -
Vivi2g03197 460 FunFam BnaA09g28200D protein 195 282 - -
Vivi2g03197 460 SMART WD40_4 373 420 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 287 326 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 330 367 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 88 125 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 126 163 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 199 237 IPR001680 GO:0005515
Vivi2g03197 460 SMART WD40_4 240 278 IPR001680 GO:0005515
Vivi2g03197 460 CDD WD40 99 420 - -
Vivi2g03197 460 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Vivi2g03197 460 PRINTS G protein beta WD-40 repeat signature 407 421 IPR020472 -
Vivi2g03197 460 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Vivi2g03197 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 277 IPR001680 GO:0005515
Vivi2g03197 460 MobiDBLite consensus disorder prediction 425 439 - -
Vivi2g03197 460 SUPERFAMILY WD40 repeat-like 99 424 IPR036322 GO:0005515
Vivi2g03197 460 Gene3D - 192 443 IPR015943 GO:0005515
Vivi2g03197 460 Pfam WD domain, G-beta repeat 376 420 IPR001680 GO:0005515
Vivi2g03197 460 Pfam WD domain, G-beta repeat 208 236 IPR001680 GO:0005515
Vivi2g03197 460 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Vivi2g03197 460 Pfam WD domain, G-beta repeat 99 125 IPR001680 GO:0005515
Vivi2g03197 460 Pfam WD domain, G-beta repeat 334 367 IPR001680 GO:0005515
Vivi2g03197 460 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 49 425 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03197 Vivi-Chr2 133160799 133162459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03197 205 421 Miscellaneous Gene Families AT5G08390 23.661 1.48e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03197 - - gmx:100778593 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03197 2 133160799 133162459 Vivi2g03197 2 133160799 133162459 ECH