Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03146 ATGTCGATGAGTTCAAGTCCTTTTCTTCGCAAGTTCAACACCTTGCAGCTTCGCATTCAACTCCGTTTCTATACCCGTCGTCGTGACCCTTTCCCCACAAAAATTTGCCACTACCTAAACCGTGCAAAACTCATAGATTCAATTCGACTTTCTCTACGCTCTGACAACCCTAATTCCACACTCCCCACTCTCATAAGCCACCGTTTATTCGACTCTTTTGTTGTCACTCATGCACTTCGTTCTGCACCTTGTGCAGATTCTGCACTTTCCCTTATTCATACTATTGAGAAAACAGAAAGTACCCATTTTTCACATACCCAGAATACCCTTCACGCTCTTGCCACTGTGCTAGCAAAATCTGGTAGATGTGATGAGCTTAAATCCCTTATTGGTGATATCCAAAGTAAACGATATGGAAATGTTAAGATCAGTTTTATGAATCTAATGCAGTGGTATGCTGCAGCTAGGGATATTGATTCTGTTCTCGAGGTTTGGGATCGGTATAGAGTTGATGCGAGTGATCGTGTATGTACCGAGTCTTATAACATTGTTATGTCTCTTTATGTAGAAATGGGTAAGGACTATGAGGCTGTTGGAGTTTTTCGTAAAATGGTTGATGAAGGGTCGGTTCCTAACTGTAGAAGCTTTAGTATAATAATTGAGCACCTTGTGAAATCAAGGAAATTTTTGGAAGCTATTGAGGTTTTTAATTTGTTGCCTTTGATGAGGATTAAGCGGACTTTGAAGCAGTACTCGGTTCTAGTTGAAGGTTTGGTTGGTAGTAAAATGTATGATGAAGTTGGAGTTTTGGTTACTGAGATGCAAGTTGATGGAATATTACCTAGTCGAACCGTGAGTTTGTTATTGAAGCAGGTGAAGGATGAGGGATTTCTTAAGGATATGGATGAATTGTTTACAGAAATTTGCCCGGATGAAAGAATCAAGAATGTAAGATATTCTAATGATAGTAGTGATGAGGATGAGAATGAAGACGAGGGTGAGGGTGAGAATGAAAATGGAAATGATACTTTGCAACGTGATCATGTAAATGGGATCCGCTTAAAACCCTGGCTAGATCCGCGGTCTCTGGCTAGTGCCTTACAGAACTGGAGTCCTGATGAGGTATCAGCACTTGAGGATGCAAAGTTTGTATGGACAACTAGGTTGGTGTGCAAGATACTTAGAAGTTTCAATAAGCCAGATACTGCGTGGAATTTCTTCTGCTGGGTTGCGGATCAACCTGGATTTACTCATAATATATACACGGTGCAAAGAATCATGACCTTTTTAGCTCGCCATGGACGCACTGAGCTAGTTGATAAACTCATCTCCAAGATCAGAATAGAGGGAATGAGACTGCCATTCAGCACCTTAAGGTTAATCGTTGACTTTTATGGGATTTCAAAAAATGCTGTTGCTGCTTTGAAGGTTTTCAACGATGATCGAATACTTTGTGGGTCTATATCAAAAGTTAATATGATGCTTCTGTATTCGTCTCTTTTAAGAACGTTAACCAAGTGTGGTAAGGATTCTGATGCCCTGGAAATGCTTGATGAGATGATTTTAAATGGAATTTGCCCGGATATGCAAACATTTTCAGGTCTAATGCAATATTTTTCCCAACTTGGTGACATTAAAACTGCACAGACACTCTTTTCAATGGTCAGACAGAGTGGTTTTGAGCCAGACGCATATCTGTTTACGGTACTCATCGAAGGCTATTGCAAGTCGAAAAGAGCTGCACTGGCTTGGAGGATATTTGAAGACATGAAGAATTCGGGTTTGATGCCTGATTTTGCCACCAAAGAGTTGCTTGTGAAGAGCCTATGGAGAGAAGGGAGACGGAGAGAGGCCGCAGCGGTAGAAGAGAGCTGTGAGGAAGTGAATATAGTCCTTCCACCCGCATTGCCTGGTCATGTATGGACTGTTAGTTCTGCAGATCTTACAAGAGTTTTTAACATTTATTCAAATTGTTTTACTTCAAAAGGTAGCTAG 1995 0.4085 MSMSSSPFLRKFNTLQLRIQLRFYTRRRDPFPTKICHYLNRAKLIDSIRLSLRSDNPNSTLPTLISHRLFDSFVVTHALRSAPCADSALSLIHTIEKTESTHFSHTQNTLHALATVLAKSGRCDELKSLIGDIQSKRYGNVKISFMNLMQWYAAARDIDSVLEVWDRYRVDASDRVCTESYNIVMSLYVEMGKDYEAVGVFRKMVDEGSVPNCRSFSIIIEHLVKSRKFLEAIEVFNLLPLMRIKRTLKQYSVLVEGLVGSKMYDEVGVLVTEMQVDGILPSRTVSLLLKQVKDEGFLKDMDELFTEICPDERIKNVRYSNDSSDEDENEDEGEGENENGNDTLQRDHVNGIRLKPWLDPRSLASALQNWSPDEVSALEDAKFVWTTRLVCKILRSFNKPDTAWNFFCWVADQPGFTHNIYTVQRIMTFLARHGRTELVDKLISKIRIEGMRLPFSTLRLIVDFYGISKNAVAALKVFNDDRILCGSISKVNMMLLYSSLLRTLTKCGKDSDALEMLDEMILNGICPDMQTFSGLMQYFSQLGDIKTAQTLFSMVRQSGFEPDAYLFTVLIEGYCKSKRAALAWRIFEDMKNSGLMPDFATKELLVKSLWREGRRREAAAVEESCEEVNIVLPPALPGHVWTVSSADLTRVFNIYSNCFTSKGS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03146 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vivi2g03146 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Vivi2g03146 664 Pfam PPR repeat 497 525 IPR002885 -
Vivi2g03146 664 Pfam PPR repeat 180 208 IPR002885 -
Vivi2g03146 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Vivi2g03146 664 MobiDBLite consensus disorder prediction 319 345 - -
Vivi2g03146 664 MobiDBLite consensus disorder prediction 324 338 - -
Vivi2g03146 664 Gene3D Tetratricopeptide repeat domain 486 646 IPR011990 GO:0005515
Vivi2g03146 664 Gene3D Tetratricopeptide repeat domain 142 357 IPR011990 GO:0005515
Vivi2g03146 664 PANTHER OS01G0167750 PROTEIN 12 662 IPR044175 -
Vivi2g03146 664 Gene3D Tetratricopeptide repeat domain 363 485 IPR011990 GO:0005515
Vivi2g03146 664 Pfam PPR repeat family 562 609 IPR002885 -
Vivi2g03146 664 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vivi2g03146 664 NCBIfam pentatricopeptide repeat 566 598 IPR002885 -
Vivi2g03146 664 NCBIfam pentatricopeptide repeat 497 528 IPR002885 -
Vivi2g03146 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03146 Vivi-Chr2 131994260 131997874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03146 180 621 Glycosyltransferase AT1G05670 22.876 3.17e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03146 - - cam:101514749 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03146 2 131994260 131997874 Vivi2g03146 2 131994260 131997874 ECH